Detail information of GWHGAAEX018535/evm.TU.scaffold_95.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672153109|ref|XP_008797547.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Phoenix dactylifera] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|W5FTK4|W5FTK4_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_5DL_591007F59.1} |
| TAIR | AT4G02750 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 2331348 | 2343616 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018535
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 78 | 106 | 9.80E-05 |
| PF01535.19 | PPR | 109 | 136 | 6.70E-08 |
| PF01535.19 | PPR | 140 | 163 | 0.0001 |
| PF01535.19 | PPR | 171 | 194 | 0.098 |
| PF01535.19 | PPR | 202 | 228 | 0.00082 |
| PF01535.19 | PPR | 233 | 262 | 2.50E-07 |
| PF01535.19 | PPR | 264 | 294 | 2.50E-08 |
| PF01535.19 | PPR | 295 | 325 | 1.30E-05 |
| PF01535.19 | PPR | 327 | 354 | 2.20E-08 |
| PF01535.19 | PPR | 357 | 382 | 0.0001 |
| PF13041.5 | PPR_2 | 455 | 503 | 7.80E-10 |
| PF01535.19 | PPR | 530 | 553 | 0.0086 |
| PF14432.5 | DYW_deaminase | 629 | 752 | 4.00E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.350 |
| SRR2545915 | Juvenile tuber | 1.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.680 |
| SRR5643514 | five period of Gastrodia elata | 1.290 | |
| SRR5643515 | five period of Gastrodia elata | 1.350 | |
| SRR5643524 | five period of Gastrodia elata | 1.380 | |
| SRR5643525 | five period of Gastrodia elata | 0.570 | |
| SRR5643528 | five period of Gastrodia elata | 0.350 | |
| SRR5643658 | five period of Gastrodia elata | 0.160 | |
| SRR5643659 | five period of Gastrodia elata | 2.090 | |
| SRR5643660 | five period of Gastrodia elata | 2.050 | |
| SRR5643661 | five period of Gastrodia elata | 2.590 | |
| SRR5643662 | five period of Gastrodia elata | 2.740 | |
| SRR5643663 | five period of Gastrodia elata | 2.100 | |
| SRR5643664 | five period of Gastrodia elata | 2.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.18 |
| Juven | Juvenile tuber | 1.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.63 | |
| Mother_Juven | Mother tuber of Juvenile | 0.47 |