Detail information of GWHGAAEX018541/evm.TU.scaffold_95.94


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-73FOG: Predicted E3 ubiquitin ligase
nrgi|672163261|ref|XP_008801472.1|2.81E-89PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Phoenix dactylifera]
Swissprottr|Q9SL78|ATL12_ARATH2.00E-73Putative RING-H2 finger protein ATL12 (Precursor)
trEMBLtr|M0TAG7|M0TAG7_MUSAM2.00E-82Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P26720_001}
TAIRAT2G200306.00E-73RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010125663532567752+
Transcript Sequence

Network for GWHGAAEX018541

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21161593.00E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.320
SRR2545915Juvenile tuber0.970
SRP108465SRR5643513five period of Gastrodia elata5.170
SRR5643514five period of Gastrodia elata2.930
SRR5643515five period of Gastrodia elata3.330
SRR5643524five period of Gastrodia elata2.710
SRR5643525five period of Gastrodia elata6.870
SRR5643528five period of Gastrodia elata8.880
SRR5643658five period of Gastrodia elata8.410
SRR5643659five period of Gastrodia elata4.130
SRR5643660five period of Gastrodia elata4.610
SRR5643661five period of Gastrodia elata5.500
SRR5643662five period of Gastrodia elata6.250
SRR5643663five period of Gastrodia elata5.510
SRR5643664five period of Gastrodia elata6.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.480
SRR6049655Rhizomagastrodiae_C368-T10_good_17.220
SRR6049656Rhizomagastrodiae_C368-T07_good_14.560
SRR6049657Rhizomagastrodiae_C368-T07_good_14.470
SRR6049658Rhizomagastrodiae_C368-T04_good_14.350
SRR6049659Rhizomagastrodiae_C368-T04_good_14.250
SRR6049660Rhizomagastrodiae_C368-T01_good_12.620
SRR6049661Rhizomagastrodiae_C368-T04_good_13.160
SRR6049662Rhizomagastrodiae_C368-T01_good_13.540
SRR6049663Rhizomagastrodiae_C368-T01_good_13.920
SRR6049664Rhizomagastrodiae_C368-T10_good_17.950
SRR6049665Rhizomagastrodiae_C368-T10_good_17.950
SRP279888GastroGastrodia elata tuber 4.37
JuvenJuvenile tuber2.27
Mother_GastroMother tuber of Gastrodia elata 14.31
Mother_JuvenMother tuber of Juvenile 10.97