Detail information of GWHGAAEX018542/evm.TU.scaffold_95.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672134797|ref|XP_008791051.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LYV3|PP377_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial (Precursor) |
| trEMBL | tr|F6I1P9|F6I1P9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60866.1} |
| TAIR | AT5G13230 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 2570383 | 2580403 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018542
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 93 | 121 | 0.021 |
| PF01535.19 | PPR | 123 | 152 | 0.022 |
| PF13041.5 | PPR_2 | 221 | 267 | 2.10E-07 |
| PF01535.19 | PPR | 298 | 321 | 0.16 |
| PF13041.5 | PPR_2 | 323 | 371 | 1.10E-08 |
| PF13041.5 | PPR_2 | 423 | 471 | 8.00E-09 |
| PF13041.5 | PPR_2 | 525 | 572 | 1.10E-09 |
| PF01535.19 | PPR | 599 | 623 | 0.0016 |
| PF14432.5 | DYW_deaminase | 698 | 822 | 2.20E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.390 |
| SRR2545915 | Juvenile tuber | 4.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.950 |
| SRR5643514 | five period of Gastrodia elata | 3.530 | |
| SRR5643515 | five period of Gastrodia elata | 3.540 | |
| SRR5643524 | five period of Gastrodia elata | 2.900 | |
| SRR5643525 | five period of Gastrodia elata | 1.860 | |
| SRR5643528 | five period of Gastrodia elata | 2.240 | |
| SRR5643658 | five period of Gastrodia elata | 1.750 | |
| SRR5643659 | five period of Gastrodia elata | 5.850 | |
| SRR5643660 | five period of Gastrodia elata | 5.910 | |
| SRR5643661 | five period of Gastrodia elata | 5.940 | |
| SRR5643662 | five period of Gastrodia elata | 5.410 | |
| SRR5643663 | five period of Gastrodia elata | 5.320 | |
| SRR5643664 | five period of Gastrodia elata | 4.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.47 |
| Juven | Juvenile tuber | 4.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.33 | |
| Mother_Juven | Mother tuber of Juvenile | 3.72 |