Detail information of GWHGAAEX018545/evm.TU.scaffold_95.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2301 | 0 | Voltage-gated Ca2+ channels, alpha1 subunits |
| nr | gi|672138680|ref|XP_008793101.1| | 0 | PREDICTED: two pore calcium channel protein 1 isoform X4 [Phoenix dactylifera] |
| Swissprot | tr|Q75VR1|TPC1A_TOBAC | 0 | Two pore calcium channel protein 1A |
| trEMBL | tr|A0A061E309|A0A061E309_THECC | 0 | Two-pore channel 1 {ECO:0000313|EMBL:EOX99429.1} |
| TAIR | AT4G03560 | 0 | two-pore channel 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 2589384 | 2708654 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018545
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 178 | 361 | 3.10E-13 |
| PF00520.30 | Ion_trans | 442 | 678 | 4.60E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006811 | Biological Process | ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.760 |
| SRR2545915 | Juvenile tuber | 22.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.330 |
| SRR5643514 | five period of Gastrodia elata | 10.240 | |
| SRR5643515 | five period of Gastrodia elata | 11.470 | |
| SRR5643524 | five period of Gastrodia elata | 10.280 | |
| SRR5643525 | five period of Gastrodia elata | 5.830 | |
| SRR5643528 | five period of Gastrodia elata | 5.830 | |
| SRR5643658 | five period of Gastrodia elata | 7.610 | |
| SRR5643659 | five period of Gastrodia elata | 10.490 | |
| SRR5643660 | five period of Gastrodia elata | 10.410 | |
| SRR5643661 | five period of Gastrodia elata | 9.110 | |
| SRR5643662 | five period of Gastrodia elata | 7.060 | |
| SRR5643663 | five period of Gastrodia elata | 9.470 | |
| SRR5643664 | five period of Gastrodia elata | 8.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.42 |
| Juven | Juvenile tuber | 11.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.50 | |
| Mother_Juven | Mother tuber of Juvenile | 7.59 |