Detail information of GWHGAAEX018547/evm.TU.scaffold_95.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 3.00E-56 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672159626|ref|XP_008799579.1| | 0 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Phoenix dactylifera] |
| Swissprot | tr|O65440|BAME3_ARATH | 0 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (Precursor) |
| trEMBL | tr|F6HGD8|F6HGD8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51139.1} |
| TAIR | AT4G20270 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 2782536 | 2788506 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018547
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 134 | 173 | 4.70E-07 |
| PF13855.5 | LRR_8 | 177 | 237 | 2.40E-06 |
| PF13855.5 | LRR_8 | 370 | 430 | 9.60E-07 |
| PF00069.24 | Pkinase | 795 | 1061 | 2.20E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.350 |
| SRR2545915 | Juvenile tuber | 0.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.820 |
| SRR5643514 | five period of Gastrodia elata | 2.150 | |
| SRR5643515 | five period of Gastrodia elata | 0.830 | |
| SRR5643524 | five period of Gastrodia elata | 2.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.270 | |
| SRR5643528 | five period of Gastrodia elata | 1.680 | |
| SRR5643658 | five period of Gastrodia elata | 0.200 | |
| SRR5643659 | five period of Gastrodia elata | 1.350 | |
| SRR5643660 | five period of Gastrodia elata | 0.280 | |
| SRR5643661 | five period of Gastrodia elata | 0.950 | |
| SRR5643662 | five period of Gastrodia elata | 0.430 | |
| SRR5643663 | five period of Gastrodia elata | 0.150 | |
| SRR5643664 | five period of Gastrodia elata | 0.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.18 |
| Juven | Juvenile tuber | 5.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.57 | |
| Mother_Juven | Mother tuber of Juvenile | 5.17 |