Detail information of GWHGAAEX018550/evm.TU.scaffold_95.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2543 | 9.00E-57 | Origin recognition complex, subunit 5 |
| nr | gi|743877418|ref|XP_010907902.1| | 1.84E-69 | PREDICTED: origin recognition complex subunit 5 isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q6EWX0|ORC5_ARATH | 2.00E-57 | Origin of replication complex subunit 5 {ECO:0000303|PubMed:16179646} |
| trEMBL | tr|M0TYV8|M0TYV8_MUSAM | 6.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P09490_001} |
| TAIR | AT4G29910 | 9.00E-57 | origin recognition complex protein 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 2797643 | 2820721 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018550
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module9 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14630.5 | ORC5_C | 62 | 203 | 1.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02607 | ORC5 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000808 | Cellular Component | origin recognition complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.300 |
| SRR2545915 | Juvenile tuber | 0.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.180 |
| SRR5643514 | five period of Gastrodia elata | 0.880 | |
| SRR5643515 | five period of Gastrodia elata | 0.730 | |
| SRR5643524 | five period of Gastrodia elata | 1.040 | |
| SRR5643525 | five period of Gastrodia elata | 1.080 | |
| SRR5643528 | five period of Gastrodia elata | 0.870 | |
| SRR5643658 | five period of Gastrodia elata | 0.900 | |
| SRR5643659 | five period of Gastrodia elata | 1.280 | |
| SRR5643660 | five period of Gastrodia elata | 1.190 | |
| SRR5643661 | five period of Gastrodia elata | 1.420 | |
| SRR5643662 | five period of Gastrodia elata | 1.960 | |
| SRR5643663 | five period of Gastrodia elata | 1.020 | |
| SRR5643664 | five period of Gastrodia elata | 1.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.21 |
| Juven | Juvenile tuber | 2.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.00 | |
| Mother_Juven | Mother tuber of Juvenile | 2.30 |