Detail information of GWHGAAEX018555/evm.TU.scaffold_95.108


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|124024518|ref|YP_001018825.1|5.00E-61nucleoside diphosphate kinase [Prochlorococcus marinus str. MIT 9303]
KOGKOG08884.00E-118Nucleoside diphosphate kinase
nrgi|629107275|gb|KCW72421.1|3.44E-124hypothetical protein EUGRSUZ_E00871 [Eucalyptus grandis]
Swissprottr|Q8RXA8|NDK4_SPIOL2.00E-119Nucleoside diphosphate kinase 4, chloroplastic (Precursor)
trEMBLtr|A0A059C2N4|A0A059C2N4_EUCGR1.00E-124Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}
TAIRAT4G239004.00E-118Nucleoside diphosphate kinase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010128977272919251-
Transcript Sequence

Network for GWHGAAEX018555

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00334.18NDK872202.70E-52
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00940ndk, NME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Drug metabolism - other enzymesmap00983
MAPK signaling pathway - plantmap04016

Gene Ontology

GO term OntologyName
GO:0006183Biological ProcessGTP biosynthetic process
GO:0006228Biological ProcessUTP biosynthetic process
GO:0006165Biological Processnucleoside diphosphate phosphorylation
GO:0006241Biological ProcessCTP biosynthetic process
GO:0004550Molecular Functionnucleoside diphosphate kinase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.770
SRR2545915Juvenile tuber26.980
SRP108465SRR5643513five period of Gastrodia elata42.000
SRR5643514five period of Gastrodia elata40.790
SRR5643515five period of Gastrodia elata42.420
SRR5643524five period of Gastrodia elata37.030
SRR5643525five period of Gastrodia elata11.440
SRR5643528five period of Gastrodia elata15.700
SRR5643658five period of Gastrodia elata11.070
SRR5643659five period of Gastrodia elata37.930
SRR5643660five period of Gastrodia elata37.390
SRR5643661five period of Gastrodia elata36.350
SRR5643662five period of Gastrodia elata30.620
SRR5643663five period of Gastrodia elata32.080
SRR5643664five period of Gastrodia elata27.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.800
SRR6049655Rhizomagastrodiae_C368-T10_good_131.010
SRR6049656Rhizomagastrodiae_C368-T07_good_152.430
SRR6049657Rhizomagastrodiae_C368-T07_good_134.160
SRR6049658Rhizomagastrodiae_C368-T04_good_146.130
SRR6049659Rhizomagastrodiae_C368-T04_good_139.940
SRR6049660Rhizomagastrodiae_C368-T01_good_131.630
SRR6049661Rhizomagastrodiae_C368-T04_good_132.770
SRR6049662Rhizomagastrodiae_C368-T01_good_162.950
SRR6049663Rhizomagastrodiae_C368-T01_good_163.480
SRR6049664Rhizomagastrodiae_C368-T10_good_1101.320
SRR6049665Rhizomagastrodiae_C368-T10_good_1101.320
SRP279888GastroGastrodia elata tuber 30.91
JuvenJuvenile tuber23.34
Mother_GastroMother tuber of Gastrodia elata 20.82
Mother_JuvenMother tuber of Juvenile 28.37