Gene detail

Detail information of GWHGAAEX018560/evm.TU.scaffold_95.114

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743755561\|ref\|XP_010912147.1\|	0	PREDICTED: transcription factor bHLH13 [Elaeis guineensis]
Swissprot	tr\|Q9LNJ5\|BH013_ARATH	6.00E-143	Transcription factor bHLH13
trEMBL	tr\|K4AZZ4\|K4AZZ4_SOLLC	2.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g096050.2.1}
TAIR	AT1G01260	2.00E-142	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	3029164	3032405	+

Transcript Sequence
>GWHTAAEX018560 CTTAATTTTAATCAGCGCAGTTTGTTCACTTGCACGAATATGAAGCATTTTTGGGTAAGTGCAAACTATCCAGTGGGGTACGGCCAACACCAAAGCTAACCCTAGGCTTGACTTCATTTCGAAACAAATCAGGGGTGGACGGGTAAGCATCCGGCCCTCCATCTCTCCCTGTTCTCTAAACGATTCTCTTACCTCTAGGCTCTCCATCTTCGTTAGATATAGATTCGGAGAGGAGATTTTACCAATTAAAGATGGTTGCTCACTCTCTGGGCGGTTGGTTCGTTGCTTCATATTCCCAAAATGGGAGTTTTCCTCTCGTTAGAGACGGCGAAGCTTGCAGAAGCCTTTGATTTCGTCTAGGGTTTGGCTGCGCAGCAGTTTGCTTTTCAGTTCTTAACGTCCAAGTCGCTTTCTGGAATTGAAAGCGATGAGGATGGATGCGATCGGAAAGGGACTATGGTCGGAAGACGATCGTGCTATGGCCGTCGCCGTCCTCGGTCCCCAGGCCTTTGACTACCTCACCAAAGGCCACCTTTCTTCAGACGGCTTAATCACCGCAGTTTGCGGCGACTGTAATCTTCAGAACAAGCTTGTGGACCTTGTCGAGGGCCCTCTTGGCGCTGGCTGGTCGGTCGCCATCTTCTGGCAGATCTCACGCTCGAAATCCGGCGATGTAGTCCTCTGCTGGGGCGACGGACATCTCAGAGAGCTCCGGGAAGGCGGCAAGAGGGAGTTCGAAACCTGGGCAACCGCTGGGCAAGGGGGATACCAGGCGATGAGAAAGCAAGTGCTGCAGAAGCTCCATCTGGTCTATGGAGGCAGTTCCGACGATGAGAATTATGCCCTCCGGCTTGATAGAGTTACTGATGCTGAGATGTTTTTTCTTGCTTCCATGTATTTTGCTTTTCCTCGAGGAGAGGGTGCGCCTGGTTCGGTGCTGCTTTCAGGAAGCCATACATGGGTTCCTGCAAGTAATTATTGTGTCAGAGCGTTTCTCGCCAGGACGGCCGGATTCCAGACCATGGTTCTTGTGCCGTTTGAAACAGGGGTTCTTGAATTAGGATCTGTGGATGTTATACAGGAGAATTTCGAAGGGTTGCAGATGATAAGATCCTTGTTCTTAGAGGGGCCTGCTTCTGGTGGAGGGGAGAATGAGTTTGAAAAAGCTTCCCGAGCTTCTCCAATTGGGTTCATGGGGAGATTGGAACAATTGCCAAAGATATTTGGGAAGGATTTGAATGTAGGGAGGTCTGAGTTCTTCAATGGGAAGATTGAGGAGAGGCCATTGGAGATTAATCGGAGCAGCAATGGTCGCAATGGTAACAGAAAGCCTCTGATTTGGAATCAGGAGCACAACTTAGGTCCTCTACAATCCAAAATTGGTAGTGGCACTATTGTGGTGGGAGGTATAGATCATCATGCCAATGGAATCAAGGATGAACTAGTGCTAAATCAATGCCAATCACAGATGTTACCACCACCACCCACAGGGCAGATTGATTTCTCTGGTGGTGCGAGCTCTTTTGTTGGCTGTCTCGGGGTGTTGGATGCAGAGCATTCCGACGCGGAGGCTTCTTGTAAAGAAGAAAAGCTTTCTATAATTGATGAGAGGAAGCCTAGGAAGAGGGGAAGGAAGCCAGCAAATGGGCGGGAGGAGCCGCTTAACCATGTCGAAGCTGAGCGACAGCGGAGGGAAAAGCTGAACCAAAGGTTCTATGCACTAAGGGCCGTTGTGCCCAACATCTCTAAAATGGATAAAGCCTCTCTTCTTGGTGATGCAATTGCCTACATCACCGAGCTTCAAAACAGGCTCAAGGAGATTGATTCTGAGAAGGAGCCATCTTTGATCAATCATAAGAAAAGAACTCCGGATATTGAGGTGCAAACCTCACACGAAGAGGTTATTGTAAGAGTTAGCTGCCCTATGGAGGTTCATCCTGTTTCTAGAGTCATTCAAGCATTCAAGGAGTCTCATGCTAATGTTATGGAGTCGAAGTTGTCAACTGTAGATGACACTGTCTTGCACACATTTATATTAAAATCTCCAGCGGGTGCTGAACAAGTTATGAAGGAGAAGCTGATGACTGCGATTTGTCAAGAAATGAATTCATCTGAGCATTAAAATTGATCTTTGCTGTGACCCAGTTACACCCTAGGAATAGACCAGATGATAATCCATATTGATGTTTTCTGTTTATATTTTTATTAAGAACTCATGGTGGTTCCATGAGTGGCAACACTGATTTGTAAGTGTTTTTGAGTGAAATTTTTTTGACATCACAAAAATTCTGTTTTGTAGTTTTCTTTTTATTTCTTGATAAATACAGAAATAGAACTGTCATTTTGTTCGCCATTTTGAAGAACATATCGCTTATTTTATTTTATTTTTTCTCATAATCAAGTTGTGGGCACGTGATTCTTCCTGCAATCAAGAAGCTTATTCTCAGATGTTGCGAACAAAATTTATTATTGATCCGAGCTCTAACTTGGAGAATTTTGAGGTAATGTATACAGTTTCATCAAATGCCATTCTTTTGCATCTCTGTGAGCTCAGTTCACTCCACATCAGTATCCAGATTGATTTATGTTTTTCTTTTCTCTAATTGGAAATATCTTGAGATAAATGAGCTTTAAATTTGTTTAAAGATTTGATTGCAATTACCTAATTGTAGAATGCAAAAATGAAATTGAATAAGGGTGCTGAACGCATCTCCTGCTTTTAGACAGGGGTTCTTCATTCCCCTCTACTTTATGCTTACTTGTACTGAAGAATAAGTGTGGCATACTGCATAAAAATCATAAATTTCTTCCAAAAAGAATATTTTGATTCAAGTGAACTTCAACATATACGATTCAATTATAGAGCACAAGGTTGTTGGCAATGCATATGGAAGTACAGCTTGCACAGTAAAGAAACATAGTTTATGAACTAGAAAACCAAACTCCAACAGGCGTTTCACATGTACAATTAGTCATCTCTCTATTCATTTCTAGTATTGCTTTCAACATTTTGTTTTCTACTGTTCTCAGGTGACATGTTCACTAAAACAAAATTATATGATTGAAAATTTTAATTTGACATTTTAGAATGCTACCATCTCAAAGAGGGCCTAGGCTTTTGTTTGGTGCCCACTCAACTTACCTTAAGCCCCAAATAACCTTTTAGAAC

Network for GWHGAAEX018560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.5	bHLH-MYC_N	51	231	2.10E-47
PF00010.25	HLH	413	459	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.060
SRP064423	SRR2545915	Juvenile tuber	9.570
SRP108465	SRR5643513	five period of Gastrodia elata	14.280
	SRR5643514	five period of Gastrodia elata	11.610
	SRR5643515	five period of Gastrodia elata	12.230
	SRR5643524	five period of Gastrodia elata	12.320
	SRR5643525	five period of Gastrodia elata	14.220
	SRR5643528	five period of Gastrodia elata	14.530
	SRR5643658	five period of Gastrodia elata	14.580
	SRR5643659	five period of Gastrodia elata	11.550
	SRR5643660	five period of Gastrodia elata	10.690
	SRR5643661	five period of Gastrodia elata	12.220
	SRR5643662	five period of Gastrodia elata	11.410
	SRR5643663	five period of Gastrodia elata	10.360
	SRR5643664	five period of Gastrodia elata	9.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.980
SRP279888	Gastro	Gastrodia elata tuber	11.94
	Juven	Juvenile tuber	18.30
	Mother_Gastro	Mother tuber of Gastrodia elata	13.02
	Mother_Juven	Mother tuber of Juvenile	16.63