Gene detail

Detail information of GWHGAAEX018561/evm.TU.scaffold_95.117

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0050	mRNA splicing protein CDC5 (Myb superfamily)
nr	gi\|743768676\|ref\|XP_010914614.1\|	PREDICTED: cell division cycle 5-like protein [Elaeis guineensis]
Swissprot	tr\|P92948\|CDC5L_ARATH	Cell division cycle 5-like protein
trEMBL	tr\|M0U2U3\|M0U2U3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P23340_001}
TAIR	AT1G09770	cell division cycle 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	3072468	3105371	+

Transcript Sequence
>GWHTAAEX018561 GTTGTACGAAATTTAGTTATTATTCGTATAAAATTTATATTTTAATTAATAATACTTTTATTAATATTAGTATTTCTTAGAATAACTTGAATTGTAACCTAACTCTTCTATCAAAAGTTCAAGACCTCACCGTCTGACCCCTCAATTCCCTCTCTGCGGCCAAATCTGCAAATCCGTCAGCTGTCGATCTCACGTCCTTTGCTCGTTTTATCTCCATTGAATTCGAAACCTCCGTCGTAGTGTTGTTCTTCTTCGGGCTGCTCTCTGTTAACCCTAAAATCAGCTATTTGTGTGCCTTAGGGCACTGCTGATAAACGATGGGACATATTTGACACAGTGCTCCTTAAAACCTTGAATTCTGAGTGATTTCCTCTTCTCCGCATCTCTTCCGACTTCAGTACTACATGTCACTCTCCTAGTGAAGCTTCTGCTCTTCCATCCCCACCGCACTTTCCCGTCAGCATCGCCTTCACAGCTCAATATCGACGTTGTCCTTCAGTTATGCACTGCACACTGTTGTAGCCCTGTCATATTTTATTTTGGTATTCTCTCGTGGTTCTCGGAAAAGTTTAAGTAACCCCTGAAACACTAAAAATTGGAGTAGGAGGATCGTTAAAAAAGAAGGCAAGATGAGGATTATGATAAAGGGAGGAGTATGGAAGAATACTGAAGATGAAATTCTCAAGGCCGCGGTTATGAAGTATGGGAAGAACCAATGGGCACGGATATCTTCTCTTCTTGTGCGCAAGTCAGCCAAGCAATGTAAGGCTAGGTGGTATGAATGGCTTGACCCATCCATTAAGAAGACAGAATGGACTAGGGAGGAAGATGAGAAGTTGCTTCATCTTGCTAAACTTATGCCTACTCAGTGGAGAACAATTGCTCCAATTGTGGGACGAACGCCATCTCAATGCCTTGAGCGTTATGAAAAATTACTTGATGCAGCCTGTGCAAAGGATGAGAATTATGAACCTAATGATGATCCGCGCAAATTGCGGCCTGGAGAGATTGACCCGAACCCAGAATCTAAGCCTGCTCGTCCGGATCCTGTAGATATGGATGAAGATGAAAAGGAAATGCTTTCAGAAGCACGGGCTAGGTTAGCCAACACTAGGGGTAAAAAGGCAAAGAGGAAGGCTAGGGAAAAACAGCTAGAAGAAGCAAGGAGGCTTGCCTCTTTGCAAAAGAGGAGAGAGTTGAAGGCAGCTGGGATTGACAACAGACATAGGAGAAGGAAAAGAAAGGGAATAGATTATAATGCTGAAATACCTTTTGAGAAGAGACCTCCTCCAGGGTTTTTTGATATTTCAGGTGAGGAAAAACCTGTGGAACAACCTAAGTTTCCTACTACTATTGAGGAGCTGGAAGGGAAAAGAAGGGTCGATATAGAAGCTCAATTAAGGAAGCAAGATGCTGCAAAGAACAAAATTTTACAAAGGCTAGATGCCCCTGCTGCAATATTTCAAGCAAACAAGCTTAACGATCCTGCAGCTGCAAGGAAGAGGGCAAAAATGATGCTACCAGCTGCACAAATTTCAGACCAGGAATATGAAGAAATTGCTAAAATGGGCTATGCTAGTGATCTTACTTCTGGAATTGATGATTTTACTGAAGGTAGTGGTGCAACACGTGCCCTTGTTGGTGATTATTCTCAAACTCCAAGAAGGGGTACGACACCGCTCAGAACTCCTCAAAGAACCCCTGCAGGAAAGGCAGATGCAATTATGATGGAGGCTGAGAACCTTGCTCGATTGAGGGAGTCTCAGACGCCTCTTCTGGGTGGAGAGAACCCCGAGTTGCACCCATCAGACTTTTCAGGCGTCACACCAAGAAAAAAAGAAATTCAAACACCTAATCCATTAGCAACACCAATGGCTAGCCCTGGGCCAATGAGTCTTACCCCTAGAATTGGCATGACTCCGTCAAGAGATGGGGTTGGTGGAACACCAAAATTTACTCCTTTTAGGGATGATCTTCGCATTAATGAGGATGTTGAAATGCAGAATAGTGAACTGCACCTGCAGGAAGAGCTGAGAAGAAGCACACGGTCAGGTTTAGCAAATCTTGCTCCACCTAAAAATGAGTACCAAATAGTTATGCAGCCAATTCCTGAGGAAAGTGAAGAAATGGATGATAAAATTGAAGACGATATGTCTGATAAAATTGCTAGAGAGAAGGCTATGGAACAAGCAAGATTGGAGGCCTTGATGAAAAAGAGATCAAAAGTACTGCAGAGAGAGCTTCCAAGGCCACCAGCTGCCTCGTTAGAACTTATAAAACATTTACTGGTTAAGAGCGATGAGGATAAAAGCTCATTTGTTCCTCCGACTTCATTCGAGCAAGCTGATGAAATGATAAATAAAGAGCTTTATTCCTTGCTAGAGCATGACAATGCTAAATATCCTTTAATTGAAAAGGCTGACAAGGACAAAGGCAAAAGGTCCAAGCATGCGGAAAATGGTAAATCATCAAATTTATCACCTGAAATTGAAGATTTTGATACTAAAGAACTGAGAGAGGCTGATTCAATGATTAAAGAAGAGATGGCATTTCTTAAGGTTGCCATGGGACATGAAAATGAGTCATTTGATGATTTTGTCAAGGCACGGGATGCATGCCAGGAAGACCTAATGTATTTTCCGGCACGCAGCACTTTTGGCCTGGCAAGCGTTGCCAGCAGTATTGACAAGCTTGCAGCCCTACAGAATGAATTTGAGATTGTGAAGAAGAAAATGGATGATGAGGCAAAAAAGGCCACGCGCCTTGAGCAGAAGATTAAGCTTCTAACTAATGGATATATGATGAGGGGCGGAAAGTTGTGGTCACAAATAGAAGCTACATTCAAGCAGATGGTGACCTCTGCGACCGAACTGGAATGCTTCCAAGCCTTGCAAAAGCAGGAAGGAGCAGCAGCTTCCTACAGAATCGATGATTTGAAGGAAGAAGTCAATAAACAGAAACAGCTGGAGCGCACTCTTCAGGAGCAGTACGGGAATCTTGTGTCTGACGAAGAGAGGATTCTGAGGATTCTTGACGAACACAAAGCACGCCTGCAAGCGGAAAAGGAAATGGCTGCCAGACAGCGTGCTGCTGAGGAGGAACTGACCGAAAGAATGCGCGCCGCTGAGGAAATGAATGAAAGAATGCTTGCTGTCGAGGAAATCGCTGCAAGAGAACGAGCTGCGGCTGAGGAGGATAAGGCTGCACGAGAACGTGCTGCTGTAGCTGAGGGGGATAATCTTACTAGAGAAGGAGCGGCAGCTGAGGAGGACAAGGCTGCAAGTGAAGGTTCGGCGGCCGAGGAGGACAAGGCTACAAGTGAAAGTGCGGCAGCTGAGGAGGACATGGCTGCAGGAGAATGTGCGGCAGCTGAGGAGAACATGGCTGCAAGAGGCGAGGTTGTGGAGGAAATGGCTGCAAGGAAGCATGCAGCTGATGAGGAAATGGCCGTCAGTGAACTTGCGACCGAGGAGGATATGACTTCAAGAGAATGTGCGACAGCTGAGGAGGAAATTGCTGCCGGAGAAAGTGTGGCCAAGGAAGATATGGCTGCCCGAAAATGTTTGGTCGAAGAGGAAGGTGCTGCTAGAAGCAATCTCGGCGAATCAATAGCCCTATCTGAAAATCCCACTATAGAGGAAACTCCGGCCAACTTCAAAAAGCCTGTTGAAATTCCTTTCTTGAGTGAAGATCCTTCTGAACAGGACCGAATTCAGGAACCTGAAGCAGCTGCTGCAGAATGCCCTAATCGTGATGAAAATTCAGTCAAAGAGAATCATATGCAGAACTCTGTGGCAATGCCGGACAGCACTATTTCATCTTCTTATCTGTGCCAATCTAATGTAAAATCTCCGTATCAAAATACCTGTAAAGAGGAAGATAAAGTGGAAGCGATGCTAGAAGAAGAGCCTCCTGTTGCTGATACTGCTGCCTTGTCATCAGCTGCTGCAAGCTACGAGGAGCAGAAGCCTGCGATCTGTGCTGATGAGGAGTTGCCTGCTGTTCTTAGCCCAAATTAGCTTGTGATGGGACACCAAAGGAAGCGGGCCGGTTTTGAGGCAAAAAGAGCACAATGATATCATGTATTCTTAGGACTGGCACTGTTTGAAACCGAGCATGTCGGGCGGCAGGTTAGCTTGACAATCTATGCTTGTGCACCTTATTATAACCTGATAGATGAGCTGCATTTTTTTTCCAAAGTGTGCGATTTGATTATGTTAAAATAGTTGTCTATTTAAGGGTGATGAATGTCTAAGAGAGAACTGGAATGCCTAGTATGCCCACTGCCTTTTACTGTGCTATTGTTGTGACTGTTTTACTTTTAAATGTAAGCCTTGTTAAAGGAAATGAAGCCATTCATCTGGGTATCATAACGCAGGTTTTTTTTTTTATTGAATGAATGCTGTGTTCTGCTGAAGTAAAAGTGCAGGGATGGAGCAG

Network for GWHGAAEX018561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.5	Myb_DNA-bind_6	10	70	1.00E-12
PF11831.7	Myb_Cef	407	653	1.50E-50

Protein Sequence

>GWHPAAEX018561
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPNDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRRRKRKGIDYNAEIPFEKRPPPGFFDISGEEKPVEQPKFPTTIEELEGKRRVDIEAQLRKQDAAKNKILQRLDAPAAIFQANKLNDPAAARKRAKMMLPAAQISDQEYEEIAKMGYASDLTSGIDDFTEGSGATRALVGDYSQTPRRGTTPLRTPQRTPAGKADAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPLATPMASPGPMSLTPRIGMTPSRDGVGGTPKFTPFRDDLRINEDVEMQNSELHLQEELRRSTRSGLANLAPPKNEYQIVMQPIPEESEEMDDKIEDDMSDKIAREKAMEQARLEALMKKRSKVLQRELPRPPAASLELIKHLLVKSDEDKSSFVPPTSFEQADEMINKELYSLLEHDNAKYPLIEKADKDKGKRSKHAENGKSSNLSPEIEDFDTKELREADSMIKEEMAFLKVAMGHENESFDDFVKARDACQEDLMYFPARSTFGLASVASSIDKLAALQNEFEIVKKKMDDEAKKATRLEQKIKLLTNGYMMRGGKLWSQIEATFKQMVTSATELECFQALQKQEGAAASYRIDDLKEEVNKQKQLERTLQEQYGNLVSDEERILRILDEHKARLQAEKEMAARQRAAEEELTERMRAAEEMNERMLAVEEIAARERAAAEEDKAARERAAVAEGDNLTREGAAAEEDKAASEGSAAEEDKATSESAAAEEDMAAGECAAAEENMAARGEVVEEMAARKHAADEEMAVSELATEEDMTSRECATAEEEIAAGESVAKEDMAARKCLVEEEGAARSNLGESIALSENPTIEETPANFKKPVEIPFLSEDPSEQDRIQEPEAAAAECPNRDENSVKENHMQNSVAMPDSTISSSYLCQSNVKSPYQNTCKEEDKVEAMLEEEPPVADTAALSSAAASYEEQKPAICADEELPAVLSPN

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
K12860	CDC5L, CDC5, CEF1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	86.430
SRP064423	SRR2545915	Juvenile tuber	88.680
SRP108465	SRR5643513	five period of Gastrodia elata	34.760
	SRR5643514	five period of Gastrodia elata	28.170
	SRR5643515	five period of Gastrodia elata	28.770
	SRR5643524	five period of Gastrodia elata	26.740
	SRR5643525	five period of Gastrodia elata	26.420
	SRR5643528	five period of Gastrodia elata	23.090
	SRR5643658	five period of Gastrodia elata	32.790
	SRR5643659	five period of Gastrodia elata	57.370
	SRR5643660	five period of Gastrodia elata	74.820
	SRR5643661	five period of Gastrodia elata	59.600
	SRR5643662	five period of Gastrodia elata	79.050
	SRR5643663	five period of Gastrodia elata	72.510
	SRR5643664	five period of Gastrodia elata	91.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.990
SRP279888	Gastro	Gastrodia elata tuber	59.86
	Juven	Juvenile tuber	49.27
	Mother_Gastro	Mother tuber of Gastrodia elata	25.86
	Mother_Juven	Mother tuber of Juvenile	30.65