Gene detail

Detail information of GWHGAAEX018563/evm.TU.scaffold_95.119

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307151984\|ref\|YP_003887368.1\|	5.00E-31	hypothetical protein Cyan7822_2113 [Cyanothece sp. PCC 7822]
KOG	KOG1840	0	Kinesin light chain
nr	gi\|720033968\|ref\|XP_010266592.1\|	0	PREDICTED: uncharacterized protein LOC104604058 [Nelumbo nucifera]
trEMBL	tr\|A0A068UV97\|A0A068UV97_COFCA	0	Coffea canephora
TAIR	AT4G10840	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	3129612	3148454	-

Transcript Sequence
>GWHTAAEX018563 ATGCCGGCCCTCGTATCCCACCCCGAGAGGCCTCCGCTGCTCCGGATCACGGTTCCGGACCGCGTAGATTCTCTGATCAGAGATAATGCAGACGATTCCGATCCTCGCAACCCTAAGACCCGCTCACCCGTGCCGAAGAAGGCGCCGTTCCCGTCCCCTTCGTCGTCGTCCCGCGCCAAGCCATCGCCGGAGAGCATTTCGGCCGGAGGAAAGCGGCGGGGTTCTTCTCTCAGCACCGAGAAACCGCACCTCGATGAATCCTCTCTGGATAACCCGGATTTAGGACCGTTCCTTCTCAAGATTGCGCGCGACACGATCGCCTCCGGCGAGGGGCCGAGCAAGGCCCTTGATTACGCCATCCGCGCCTGCAAATCGTTCGAGCGGTGCGCGGTGGAGAGCGGAGAGCCGAGCCTTGAGCTGGCCATGAGCCTCCATGTGACTGCCGCTATCTATTGCAGTCTTGGCCGGCACCGGGAAGCGATTCCGGTAATGCAGCGTGCTGTAAAGGTGCCGGACGTGTCGCGAGGGCTGGACCATGCCCTCGCCGCCTACTCCGGATATATGCAGCTCGGGGACACACACTCCATGCTGGGACATATAGATCAATCCATTGATTGCTATTCCCGAGGCCTCGAGATTCAGATCCAGGCTCTCGGTGATTCTGATCCAAGAGTCGCTGAGACCTGCCGATACCTGGCAGAAGCGCATGTCCAAGCAATGCAGTTTGACAAGGCGGAGAAGCTCTGTCAGAAAACCCTTGAGATCCACCAAGAGCATAGCGCACCGGCTTCAATGGAGGAGGCTGCTGATCGACGCCTTATGGCTATTATCTGTGATGCCAAGTGCGATTATGATGAGGCTCTCGAGCATTTAGTCCTGGCTTCCATGGCCATGATTGTCAACGGACATGAGAATGAGGTTGCCTCCATAGACGTGAGCATTGGCAACACCTACCTTGCTCTCGGCCGCTATGATGAGGCTGTGTTTTCATATCAGAAGGCTCTTACCGTTTTTAAATCTACCAAAGGTGATAACCATCCGGCGGTTGCTTTGGTGTTGGTTCGCCTCGCTGATCTTTATTACAGAACGGGTAAGCTCAGAGAATCAAGAACGTATTGTGAGAATGCCCTAAGAATATATGCCAAGCCTGTGCCAGGGGCAGTTGCTGAAGACATTGCTGGTGGTTTCGTGGAAATTGCGAGCTTGTATGAAGCATTTGAAGAACCTGAGGAGGCATTGAAGTTATTGCAGAAATCTTTGAAGTTATTGGAAGATGTTCCTGGACAATGGAGCTCCATTGCTGGTATTGAAGCGCAGCTTGGAGTAATGTTTTACATAGTTGGGAGGTATGGGGATTCCATAAACTCCTTTGAAAGTGCTGTTGGAAAGCTGAGGGCAATTGGTGAAAAGCAGTCAGCTTTCTTTGGGATGGTGCTAAACCAGATGGGATTGGCCTGCATTCAGTTGTATAAGATTGATGAGGCTGCAGAGCATTTTGAAGAATCTAAAGGAATATTGGAGCAGGAATATGGAACGAGCCATCAAGATACTCTTGGAGTCTGCACTAACCTTGCAGCTACATATGATGCTATGGGAAGGGTTGACGAGGCAATCGATTTGCTGGAGCATGTTGTCAAGGTTAGAGAAGAAAAGCTGGGGACGGCGAACCCCGATGTTGACGAGGAGCGGCGGCGGCTCAGCGAGCTGCTGAAGGAGACTGGAAGAACCAGGAAAACCAATCAGGAATCCCTGGAAAATCTCTTCGTCTCCGCCTCGACTCAGAGGGCACAAAAGAGAGGATCCACTAAAAGATGGCCCATCCTCCCTTTTAAATCATAA

Network for GWHGAAEX018563

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13374.5	TPR_10	225	258	0.0034
PF13424.5	TPR_12	307	381	1.20E-14
PF13424.5	TPR_12	478	550	2.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.110
SRP064423	SRR2545915	Juvenile tuber	48.660
SRP108465	SRR5643513	five period of Gastrodia elata	52.540
	SRR5643514	five period of Gastrodia elata	52.760
	SRR5643515	five period of Gastrodia elata	56.540
	SRR5643524	five period of Gastrodia elata	42.830
	SRR5643525	five period of Gastrodia elata	57.900
	SRR5643528	five period of Gastrodia elata	38.310
	SRR5643658	five period of Gastrodia elata	54.920
	SRR5643659	five period of Gastrodia elata	72.220
	SRR5643660	five period of Gastrodia elata	60.940
	SRR5643661	five period of Gastrodia elata	65.750
	SRR5643662	five period of Gastrodia elata	66.610
	SRR5643663	five period of Gastrodia elata	62.580
	SRR5643664	five period of Gastrodia elata	63.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	65.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.220
SRP279888	Gastro	Gastrodia elata tuber	46.01
	Juven	Juvenile tuber	49.24
	Mother_Gastro	Mother tuber of Gastrodia elata	31.92
	Mother_Juven	Mother tuber of Juvenile	20.74