Detail information of GWHGAAEX018568/evm.TU.scaffold_95.124
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297569078|ref|YP_003690422.1| | 0 | Ketol-acid reductoisomerase [Desulfurivibrio alkaliphilus AHT2] |
| nr | gi|672191848|ref|XP_008775613.1| | 0 | PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|Q05758|ILV5_ARATH | 0 | Ketol-acid reductoisomerase, chloroplastic (Precursor) |
| trEMBL | tr|M5X0L5|M5X0L5_PRUPE | 0 | Ketol-acid reductoisomerase {ECO:0000256|PIRNR:PIRNR000118} |
| TAIR | AT3G58610 | 0 | ketol-acid reductoisomerase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 3291862 | 3297793 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018568
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07991.11 | IlvN | 124 | 298 | 2.30E-30 |
| PF01450.18 | IlvC | 307 | 452 | 2.40E-34 |
| PF01450.18 | IlvC | 465 | 537 | 1.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009082 | Biological Process | branched-chain amino acid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0004455 | Molecular Function | ketol-acid reductoisomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 486.170 |
| SRR2545915 | Juvenile tuber | 639.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 287.460 |
| SRR5643514 | five period of Gastrodia elata | 234.220 | |
| SRR5643515 | five period of Gastrodia elata | 289.780 | |
| SRR5643524 | five period of Gastrodia elata | 261.410 | |
| SRR5643525 | five period of Gastrodia elata | 139.010 | |
| SRR5643528 | five period of Gastrodia elata | 174.950 | |
| SRR5643658 | five period of Gastrodia elata | 160.660 | |
| SRR5643659 | five period of Gastrodia elata | 623.530 | |
| SRR5643660 | five period of Gastrodia elata | 709.410 | |
| SRR5643661 | five period of Gastrodia elata | 666.510 | |
| SRR5643662 | five period of Gastrodia elata | 627.490 | |
| SRR5643663 | five period of Gastrodia elata | 615.630 | |
| SRR5643664 | five period of Gastrodia elata | 703.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 283.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 213.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 265.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 274.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 191.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 171.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 236.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 226.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 240.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 221.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 234.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 234.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 615.22 |
| Juven | Juvenile tuber | 435.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 114.78 | |
| Mother_Juven | Mother tuber of Juvenile | 231.08 |