Detail information of GWHGAAEX018569/evm.TU.scaffold_95.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|330507774|ref|YP_004384202.1| | 4.00E-20 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| KOG | KOG1124 | 7.00E-169 | FOG: TPR repeat |
| nr | gi|743770675|ref|XP_010915631.1| | 0 | PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Elaeis guineensis] |
| Swissprot | tr|Q9MAH1|TTL1_ARATH | 0 | TPR repeat-containing thioredoxin TTL1 |
| trEMBL | tr|M0SM73|M0SM73_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P08560_001} |
| TAIR | AT2G42580 | 7.00E-169 | tetratricopetide-repeat thioredoxin-like 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 3379394 | 3385484 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018569
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13414.5 | TPR_11 | 205 | 246 | 1.00E-06 |
| PF13432.5 | TPR_16 | 441 | 501 | 0.00015 |
| PF00085.19 | Thioredoxin | 587 | 656 | 7.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.670 |
| SRR2545915 | Juvenile tuber | 11.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.040 |
| SRR5643514 | five period of Gastrodia elata | 11.120 | |
| SRR5643515 | five period of Gastrodia elata | 15.820 | |
| SRR5643524 | five period of Gastrodia elata | 7.840 | |
| SRR5643525 | five period of Gastrodia elata | 3.810 | |
| SRR5643528 | five period of Gastrodia elata | 3.950 | |
| SRR5643658 | five period of Gastrodia elata | 3.230 | |
| SRR5643659 | five period of Gastrodia elata | 9.770 | |
| SRR5643660 | five period of Gastrodia elata | 5.860 | |
| SRR5643661 | five period of Gastrodia elata | 7.290 | |
| SRR5643662 | five period of Gastrodia elata | 7.190 | |
| SRR5643663 | five period of Gastrodia elata | 8.360 | |
| SRR5643664 | five period of Gastrodia elata | 7.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.46 |
| Juven | Juvenile tuber | 7.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.27 | |
| Mother_Juven | Mother tuber of Juvenile | 4.85 |