Gene detail

Detail information of GWHGAAEX018570/evm.TU.scaffold_95.127

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743758476\|ref\|XP_010926916.1\|	1.65E-63	PREDICTED: probable WRKY transcription factor 28 [Elaeis guineensis]
Swissprot	tr\|Q8VWJ2\|WRK28_ARATH	1.00E-50	Probable WRKY transcription factor 28
trEMBL	tr\|M0SP14\|M0SP14_MUSAM	7.00E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P14990_001}
TAIR	AT4G18170	3.00E-50	WRKY DNA-binding protein 28

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	3414105	3418132	-

Transcript Sequence
>GWHTAAEX018570 GAGTGAATTTTTGTTCTCCTAAAAATATTAATTAATGAATTTGAACGTGCTTACTCACACTGCTATAAAAATATATAAATCAGGGTTTAATGATTAAAAATTATAGGAAGATGGAAGCCTTTGTAAGAATAAATTATAATGGAATTCATCAAGTGAGTCAGGCTTTGGGGCTTCTCTCATGACTTCTGCTTAATGATATTTAAATTCTGTGAAAATACTCGATAAGCTTAGTGTGTAGACTGTGTGGGATGTAAGATGTTGTCTCTTATTTTTACTATAGAACACAATTAAGTCTAGCGTTCTTAAATTCTTCCAAGAAAAAAAAAAAATCATATCTTTAAGACTTTCACTTAAAATTAAATGTGGAATATATAATAGAAGAACTTATATATAAAAAAGGAAAGAAAAGGCTAACAAAAAGTCTTCCCCCTAACCCCTGCCAGCCCCCACCAACCAAAGCTAAGGAAAGAACCCCACTTCTCTCTTCTCTTATCTCATCAAAGCCTCTCCTTTTCTAGCTCCTCTTCACTCCCTTCACTTTCTGCTCTCTCTCAAGCCATATCTTCAACCTTTCTTCTACTTTTCTTCCTCTCATACCAAAGATTCATGTCAGAGGAAAAATTAGGAGAGTTCTTCCACAATGAAAGCGCCTTCTTCGACCCGTACTCGGCTTTCTCTCTCCCACCATTTGCAGGATTCTTAGATTGCCATGTGGAAAGCTCGGCGGAACTTGGCCTCCCGAGCAATTCGTCGCAGGAGCCTTTCTTCTGGTTCGGCGATCGGCGTAAGGCCGCCGATGCGTCCGAGTTCACGGCGGCGAACTCTTCTGTGTCTTCGTTGTCGACGGAAGCAGCTGGAGACGAGGTTTCTGTTAAGGTGGAGAAGAACGAGGAGAAGGAACAAGAAGAGAATTTTATATGTTATGGTGATGGGGAGGGTGATCAAGACGAAAAGGATAAGAAAGTGAGCAAGTCGAACAACAAAGCAGAGAAAAGGAAAAGAGAGCCTCGCTTCGCCTTCATGACAAAGAGCGAGGTTGATAACCTAGAAGATGGCTACCGTTGGAGAAAGTATGGACAAAAGGCAGTCAAGAACAGCCCTTTTCCAAGGAGTTATTATCGATGCACCACACAGAAATGCAGCGTGAAGAAGAGAGTGGAACGATCATACGAAGACCCATCCATAGTTATAACAACATATGAAGGACAGCACACTCATCACTACCCTTCCCACGTTCGAGGAAGTTCCCATGTGCTGGCCTCAAACCAGTATTCTTCTTCCACAACTCCAAGCTTCTACCATGATTTGCTCCTCCAAACCCTAACTCCACCCCTTCATCAGCACCTTGATCAGCTTCCTTCTAACTATCATGATCTCCTTCTTAATCTTCGTGACAACATGTATCCATCATCATTCATAAACAGCAGTCAGCCATGACAAAACTAATGCAATCTATATATATATATATATTATGATCATGAGTTAAGCACATTGTGCGTATGATACATTTGGGGGGTTCTAATATTATTATATTCTGATATAAATTATGTAATATATGTGCTATAAGGCTAGTGTGTAGTGTAGAACAAGTGCATGCACGATGCATGCTAGTTAAATTGATGAGGTTTTTGAATTGTGACCTTATTTTTAATGTTTTTGTTTTTCCTTGTATTCCATATATGAGTTGTGCGTATGGATTCTGGAAGGGAGCATTTAATGTATGCTTTAGAGTGATGGGTACTCTAGGATTGTTCCAAAGAGAGATGTCTCTTTCATTGGAAAAGCAAAATGCTATATATGTATAATATATGGGGACCAGCGCATTTATTGGAGGGGAGGAGGATATGTGCTAATGTGCATGGCTTGTTCATCATGCAAAACCTGCTTTCGGTTCATATTTGGTGTATGGAGTTATAGAGGAAATATTTTAGTTCTTGATTAGGGTGTGTATTTTGGAGTCTGTGGGGGAAGTACTTTGAGCTGCTAATATTAGAATGTAGCTTTATTGCCACTAATTTTATGGCTTAACTACTAGATATATTTTGATGGATTAGTGTTAGTAGTGTCGGCTGTTTTTACTTCTCATAACTATTTTTTTGAGGGTTATATCATTGAAATTTTGTTACACATTGTTATTGTAACATTAAAATGATGATAATTTTTTATAAAATTGTGG

Network for GWHGAAEX018570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.14	WRKY	148	204	1.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.190
SRP064423	SRR2545915	Juvenile tuber	21.020
SRP108465	SRR5643513	five period of Gastrodia elata	18.460
	SRR5643514	five period of Gastrodia elata	12.400
	SRR5643515	five period of Gastrodia elata	24.700
	SRR5643524	five period of Gastrodia elata	19.540
	SRR5643525	five period of Gastrodia elata	7.720
	SRR5643528	five period of Gastrodia elata	17.350
	SRR5643658	five period of Gastrodia elata	8.540
	SRR5643659	five period of Gastrodia elata	5.580
	SRR5643660	five period of Gastrodia elata	3.480
	SRR5643661	five period of Gastrodia elata	6.210
	SRR5643662	five period of Gastrodia elata	4.940
	SRR5643663	five period of Gastrodia elata	2.570
	SRR5643664	five period of Gastrodia elata	1.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.940
SRP279888	Gastro	Gastrodia elata tuber	5.53
	Juven	Juvenile tuber	2.41
	Mother_Gastro	Mother tuber of Gastrodia elata	64.05
	Mother_Juven	Mother tuber of Juvenile	67.07