Detail information of GWHGAAEX018573/evm.TU.scaffold_95.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37521534|ref|NP_924911.1| | 3.00E-32 | hypothetical protein glr1965 [Gloeobacter violaceus PCC 7421] |
| KOG | KOG0266 | 0 | WD40 repeat-containing protein |
| nr | gi|719980784|ref|XP_010249918.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: transcriptional corepressor LEUNIG [Nelumbo nucifera] |
| Swissprot | tr|Q9FUY2|LEUNG_ARATH | 0 | Transcriptional corepressor LEUNIG |
| trEMBL | tr|Q6H976|Q6H976_ANTMA | 0 | STYLOSA protein {ECO:0000313|EMBL:CAF18245.1} |
| TAIR | AT4G32551 | 0 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 3518294 | 3613307 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018573
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08513.10 | LisH | 155 | 180 | 6.00E-07 |
| PF00400.31 | WD40 | 714 | 738 | 0.049 |
| PF00400.31 | WD40 | 745 | 781 | 0.00013 |
| PF00400.31 | WD40 | 788 | 825 | 0.0007 |
| PF00400.31 | WD40 | 869 | 905 | 2.50E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LUG |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.500 |
| SRR2545915 | Juvenile tuber | 8.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.370 |
| SRR5643514 | five period of Gastrodia elata | 3.900 | |
| SRR5643515 | five period of Gastrodia elata | 3.570 | |
| SRR5643524 | five period of Gastrodia elata | 3.270 | |
| SRR5643525 | five period of Gastrodia elata | 4.880 | |
| SRR5643528 | five period of Gastrodia elata | 2.740 | |
| SRR5643658 | five period of Gastrodia elata | 3.590 | |
| SRR5643659 | five period of Gastrodia elata | 3.610 | |
| SRR5643660 | five period of Gastrodia elata | 4.550 | |
| SRR5643661 | five period of Gastrodia elata | 3.500 | |
| SRR5643662 | five period of Gastrodia elata | 3.510 | |
| SRR5643663 | five period of Gastrodia elata | 3.830 | |
| SRR5643664 | five period of Gastrodia elata | 3.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.46 |
| Juven | Juvenile tuber | 8.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.98 | |
| Mother_Juven | Mother tuber of Juvenile | 6.11 |