Detail information of GWHGAAEX018575/evm.TU.scaffold_95.133
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297621203|ref|YP_003709340.1| | 4.00E-22 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG0698 | 6.00E-163 | Serine/threonine protein phosphatase |
| nr | gi|743769378|ref|XP_010914976.1| | 0 | PREDICTED: probable protein phosphatase 2C 57 [Elaeis guineensis] |
| Swissprot | tr|Q69VD9|P2C57_ORYSJ | 8.00E-178 | Probable protein phosphatase 2C 57 |
| trEMBL | tr|D7SUM8|D7SUM8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI20977.3} |
| TAIR | AT2G25620 | 6.00E-163 | DNA-binding protein phosphatase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 3677114 | 3699213 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018575
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00481.20 | PP2C | 85 | 333 | 4.80E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DBP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043169 | Molecular Function | cation binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.450 |
| SRR2545915 | Juvenile tuber | 19.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.400 |
| SRR5643514 | five period of Gastrodia elata | 15.790 | |
| SRR5643515 | five period of Gastrodia elata | 58.570 | |
| SRR5643524 | five period of Gastrodia elata | 15.540 | |
| SRR5643525 | five period of Gastrodia elata | 40.310 | |
| SRR5643528 | five period of Gastrodia elata | 109.090 | |
| SRR5643658 | five period of Gastrodia elata | 33.060 | |
| SRR5643659 | five period of Gastrodia elata | 22.950 | |
| SRR5643660 | five period of Gastrodia elata | 24.810 | |
| SRR5643661 | five period of Gastrodia elata | 29.240 | |
| SRR5643662 | five period of Gastrodia elata | 45.350 | |
| SRR5643663 | five period of Gastrodia elata | 37.120 | |
| SRR5643664 | five period of Gastrodia elata | 17.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.42 |
| Juven | Juvenile tuber | 11.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.67 | |
| Mother_Juven | Mother tuber of Juvenile | 16.71 |