Detail information of GWHGAAEX018584/evm.TU.scaffold_95.142


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|18976487|ref|NP_577844.1|7.00E-127proteasome-activating nucleotidase [Pyrococcus furiosus DSM 3638]
KOGKOG0728026S proteasome regulatory complex, ATPase RPT6
nrgi|743769312|ref|XP_010914939.1|0PREDICTED: 26S protease regulatory subunit 8 homolog A [Elaeis guineensis]
Swissprottr|Q9C5U3|PRS8A_ARATH026S protease regulatory subunit 8 homolog A
trEMBLtr|M0RLT8|M0RLT8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P27140_001}
TAIRAT5G199900regulatory particle triple-A ATPase 6A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010138305163852143-
Transcript Sequence

Network for GWHGAAEX018584

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA2023354.40E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03066PSMC5, RPT6 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163Biological Processprotein catabolic process
GO:0005524Molecular FunctionATP binding
GO:0016787Molecular Functionhydrolase activity
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms93.960
SRR2545915Juvenile tuber108.030
SRP108465SRR5643513five period of Gastrodia elata195.260
SRR5643514five period of Gastrodia elata185.740
SRR5643515five period of Gastrodia elata199.050
SRR5643524five period of Gastrodia elata202.710
SRR5643525five period of Gastrodia elata196.450
SRR5643528five period of Gastrodia elata199.230
SRR5643658five period of Gastrodia elata214.770
SRR5643659five period of Gastrodia elata164.830
SRR5643660five period of Gastrodia elata171.320
SRR5643661five period of Gastrodia elata190.600
SRR5643662five period of Gastrodia elata171.920
SRR5643663five period of Gastrodia elata184.480
SRR5643664five period of Gastrodia elata158.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1149.660
SRR6049655Rhizomagastrodiae_C368-T10_good_1113.110
SRR6049656Rhizomagastrodiae_C368-T07_good_1146.670
SRR6049657Rhizomagastrodiae_C368-T07_good_1144.900
SRR6049658Rhizomagastrodiae_C368-T04_good_1134.800
SRR6049659Rhizomagastrodiae_C368-T04_good_1141.240
SRR6049660Rhizomagastrodiae_C368-T01_good_1140.710
SRR6049661Rhizomagastrodiae_C368-T04_good_1130.830
SRR6049662Rhizomagastrodiae_C368-T01_good_1166.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1141.040
SRR6049664Rhizomagastrodiae_C368-T10_good_1175.990
SRR6049665Rhizomagastrodiae_C368-T10_good_1175.990
SRP279888GastroGastrodia elata tuber 191.16
JuvenJuvenile tuber295.97
Mother_GastroMother tuber of Gastrodia elata 208.57
Mother_JuvenMother tuber of Juvenile 301.93