Gene detail

Detail information of GWHGAAEX018585/evm.TU.scaffold_95.144

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3487	3.00E-44	TRAPP 20 K subunit
nr	gi\|406657696\|gb\|AFS50006.1\|	4.87E-62	SNARE-like protein [Dendrobium catenatum]
trEMBL	tr\|J9Z229\|J9Z229_9ASPA	2.00E-62	SNARE-like protein {ECO:0000313\|EMBL:AFS50006.1}
TAIR	AT1G80500	3.00E-44	SNARE-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	3918922	3934910	+

Transcript Sequence
>GWHTAAEX018585 CTAAAATTTCATAAAAAGAATTAGTTCAAGAATAAGATAACAATATACTTTATTGGGATAGTCAAATTGCCATTCATTTGAGAAAGTATCTTATATCCCATATATTAATAAAGGATAGACAATTATAGTTTCATCACATCCATTGGCTAGTTGATGATTGAACCCTTCTGTTGGGGAAAATATTTGGTGCAAAATTTTTTGCTGATATGCTAATTAAGTTAATCACCATCCAAAAGTTGTGGCTATGCATTGCCTTAGTTGACTTTTAGAGTACTTGATGATTGGAGGCGCTACATCAGAGAGTGATTATTCTGAGATTCATATAAGTTCAAAGAAAGAGATACTACCAAAATGAGATGTTATGCATGAAAATTTAAAATAATCTCATTTATGAAGACGTTCGGATTTGTTGATTGGAAAAAATTCAATTTTATTTTCTTTCATTATTAAATGAAAAATGAAGTTCTCATAAAAAATAGCTATCAAATTACAATTTTTATGTTGTGATTGTTGAGAGATTATTAATAGGGGATAAAAGTGAATTAGAGTAAACATACCTCAAAGCATAATCTTGTCTTTATTCTCTTGTAATTATTTCCTGTATCTCTTTTGAGTAATAAAAGAAGATTCCTCTGGCACGGCCTGTGGACGTAGGTGAACGATTATTTGTGCATGTACGCAGTGTGAAGAGTAATAAATTTTTTGTATTTGTGCATACTTGTTTCATTCATATATTTGCTTGTATTTCCTTTCTTGGGTGGTTGTACGCAGTGTGAAGAGAAGTTCGTCTCTTTGTGAATATATTTCCCAATAATATTGAGCCCAAAGGGGTGGCAACGTCTTTGTGATCCCTCAATACTTGCTCCACCCTATTTTTTCTACAATTTGCTTATCATCAGACCATGACTTCCTTACTTGCTAAGGCTGCATTTGTTGGTGTTGTGGCTTGAAATAAACCTCCTGAGGTGATTACAAATGTCCTTGTAGAATTGTCTCTGGATAGCGCTCTTGTCTCAAAATGCTTCACCACGCCCCCCTGGAGCAGCTCTTTACACAGTTGTGTTCATTCTGATTTCGTAGCAAATCCACAGGCTGCAGTTCTTGGGAGCTTCAGCATGCTGCAGTTTGCCTCACATCCATGTTATTCGGCTCATGGTTTCTGCTGCTATTGGTGTGGTTCGGCTGAGACCACTTTTAGATTTGGCATCTCTGCACACTGTCCTTAAACCGATTGCAGTACCTTTTTCACCTAGCTTCTGAGAGGATGGTTCAGCATTTGCAGAAAGCTGCTCAATCTCAAAACTGAATTTGTATCTCTGCACACTGGTTGGGCAGTTGGAATTTAAAACTGCATTTGGTTACTATGGGCACTTCGAGGAACAGCTGTTTTATTGAGGAGCATTCGTCCATTTGGTCAACTTGTACACATTCATTGTTACGGTGTCCTACCTTACCACATTCCATGCAATGTTTCGTTGGGCCCTTATAGTGAATTTGTATATTTATAAGCCCACTGGAGCTTCTAAATAATAGGTTAGCAATCTATGCTTTGAAAGATTCGGATTAACACAAATGCGGGCAAAAGTCCCTTTCTTAACATTAATTGTAGGACCGTCTATCTATAAAGGCTTCCCAACTTCAACGGCAATATGAGTGAGATTATCCTCAGTTCAAAGATTCAATGGAAAACCCAGAAGATGAATCCAGAAAGCAACTTTATTACTGGGATTAAAAGGCTATCACCGGTTGTGGGTCTTTGCCCACACAGTTACCTTCCAATAAGCTATGGGCCACCCATGTGACCCTTTGTACTCAACAAAATGCTCCATCTTTTCTTTAGTTCTTTCACTATGTGGAAAGAGATTTATCTTTCAAATACCCAAACAATTAGAGCTCCATCAAATCTACTCCGGGCACGAGTTTCTTCCACAAAATTAAGGAGAAGCTCCCCATCATTTTCTTTCATGGTGTTGAAGTCATCAATGGAGGGACATCTTGTTGGTTTTGCTCCAACAACACTGATTTTCTCCAATTTAAATATTATGAATGGAAGCATCAAGTAGAAAAATCTGGTGTGCACTTAACGGCAACAACGTTAAAAGGCTCAGTAGAGTAATATTCAGACACCCATGGCAACAATTTTGACTCAGAAATGATGTTCAACATAAAATTAGACATCTTATTATCTTCGAAAATATTTTGCACATTGCCCACACAGACGTTTGTGAACTTATTTGCAAACCAGCCATTCCAAAGCAACCCGTTGCTGTGCATACTCGAATCAGGGTTCATGGCATCACTTCGTGGTTGCCTCGAAGTCTCCATGTACAGTGAGATGTTAGATTGATGATGTATTGCTACTGAATTGGAATCAAGTTTTGCATAGGGTGCAGGTCACCTGTCTCCTTCCTAGCCTCACCTGCATCCCGGTTTGATTTTACACTACTGCTGAACTGCTGTGTTTGCACATTGTTGCCTTCATGTTGCTACAATTGCTTTCCATTAATGCAATCTTTAAGCTGTTGCATCATAGCTTGACTGCTTTTGTTATCTTTGTCCTTGTCCGAGGCTGCTGATTTGCTAAGGGAACTCCCGCAAGCTGGACTGATGCCCACCACCGCTGAGTGGTGGTGAACTTCACACTCTTTCCATGCCTCCCCTTCTTCTATGCAAACCTTTGCACATAAGAACACCCGTCTAAGTATGAAAGAAATTGTTTAATCCAAATTGCTGGAACTTGGGGCTGATGTTTCAGGTCTTTATTGGGAAAGCTTTTCCCTGAACAGTGAATTGAGGTGGTATCTTTTCAATTTGCTTAGTGAACTGATGGGAATACAATTTTTCGCTAATTTCATCTAATTGGATTGGCAATGAGCAAAACTTATTTTAATTTATTGTTTAAAGGCTTATGGTTAATTTTGTTCCTTTTTTTCTTTATTCTTTTTGAAATCTTGCTAGGCATCTTGGGCGATAAATTATGGCTAGCACAGCTTGCTTCATCATTGTTAGCAGAAACGACATTCCTATATATGAAGCTGAATTGGGATCAGCAGTTAAGAAGGAAGAAGCAGCTCATCAACATCATTTTATTCTTCATGCTGCATTAGATATTGTTCAAGATCTTGCATGGACAACCAGTGCTATGTTTTTGAAGACGATGGACAGATTCAACGACTTGGTTGTATCAGTATATGTTACTGCTGGTCATATCCTTAACGTCAACCTATTGATGCTGCTTCATGACTCACGAAATGAAGATGCAATAAAAAGTTTTTTTCAAGAGGTTCATGAACTTTATATAAAGGTACAACAGCAGCTCGGCCACCCTTATCTTGAAAATTGGTTACATTTTAAGTGATGTGCTTGAATGCATTTTATTTGTTTCAATATAATTACTGATTATGGAATAAATCCTTCATTTTAAACCCTTGATGAATATTTGATGAATTTTATTTAGAAAGATTCTAATTTCATTATGGGAGTCTTTTCCATTTTTTTAATTGTA

Network for GWHGAAEX018585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04628.12	Sedlin_N	9	110	5.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006888	Biological Process	ER to Golgi vesicle-mediated transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.640
SRP064423	SRR2545915	Juvenile tuber	1.180
SRP108465	SRR5643513	five period of Gastrodia elata	0.980
	SRR5643514	five period of Gastrodia elata	1.430
	SRR5643515	five period of Gastrodia elata	1.030
	SRR5643524	five period of Gastrodia elata	1.170
	SRR5643525	five period of Gastrodia elata	0.670
	SRR5643528	five period of Gastrodia elata	0.770
	SRR5643658	five period of Gastrodia elata	0.920
	SRR5643659	five period of Gastrodia elata	0.930
	SRR5643660	five period of Gastrodia elata	0.720
	SRR5643661	five period of Gastrodia elata	0.890
	SRR5643662	five period of Gastrodia elata	0.970
	SRR5643663	five period of Gastrodia elata	0.800
	SRR5643664	five period of Gastrodia elata	1.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.830
SRP279888	Gastro	Gastrodia elata tuber	1.58
	Juven	Juvenile tuber	3.43
	Mother_Gastro	Mother tuber of Gastrodia elata	3.42
	Mother_Juven	Mother tuber of Juvenile	5.91