Detail information of GWHGAAEX018586/evm.TU.scaffold_95.145
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108762077|ref|YP_634103.1| | 8.00E-16 | tRNAHis guanylyltransferase [Myxococcus xanthus DK 1622] |
| KOG | KOG2721 | 2.00E-80 | Uncharacterized conserved protein |
| nr | gi|743786724|ref|XP_010922243.1| | 9.87E-104 | PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4ISV6|THG2_ARATH | 2.00E-78 | tRNA(His) guanylyltransferase 2 |
| trEMBL | tr|M0TME5|M0TME5_MUSAM | 9.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03920_001} |
| TAIR | AT2G32330 | 2.00E-80 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 3943626 | 3960924 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018586
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04446.11 | Thg1 | 6 | 135 | 2.30E-51 |
| PF14413.5 | Thg1C | 139 | 179 | 1.00E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006400 | Biological Process | tRNA modification |
| GO:0008193 | Molecular Function | tRNA guanylyltransferase activity |
| GO:0000287 | Molecular Function | magnesium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.190 |
| SRR2545915 | Juvenile tuber | 10.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.950 |
| SRR5643514 | five period of Gastrodia elata | 7.300 | |
| SRR5643515 | five period of Gastrodia elata | 7.360 | |
| SRR5643524 | five period of Gastrodia elata | 7.900 | |
| SRR5643525 | five period of Gastrodia elata | 5.510 | |
| SRR5643528 | five period of Gastrodia elata | 5.890 | |
| SRR5643658 | five period of Gastrodia elata | 5.120 | |
| SRR5643659 | five period of Gastrodia elata | 10.380 | |
| SRR5643660 | five period of Gastrodia elata | 8.760 | |
| SRR5643661 | five period of Gastrodia elata | 6.490 | |
| SRR5643662 | five period of Gastrodia elata | 10.280 | |
| SRR5643663 | five period of Gastrodia elata | 8.240 | |
| SRR5643664 | five period of Gastrodia elata | 7.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.89 |
| Juven | Juvenile tuber | 8.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.82 | |
| Mother_Juven | Mother tuber of Juvenile | 10.02 |