Detail information of GWHGAAEX018592/evm.TU.scaffold_96.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392411628|ref|YP_006448235.1| | 2.00E-17 | hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799] |
| KOG | KOG0379 | 7.00E-163 | Kelch repeat-containing proteins |
| nr | gi|586770126|ref|XP_006856448.1| | 0 | hypothetical protein AMTR_s00047p00230470 [Amborella trichopoda] |
| Swissprot | tr|Q9MA55|ACBP4_ARATH | 1.00E-31 | Acyl-CoA-binding domain-containing protein 4 |
| trEMBL | tr|U5D6N5|U5D6N5_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN17915.1} |
| TAIR | AT1G74150 | 7.00E-163 | Galactose oxidase/kelch repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000091 | 377104 | 414785 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018592
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13415.5 | Kelch_3 | 45 | 94 | 7.00E-11 |
| PF13415.5 | Kelch_3 | 96 | 145 | 4.10E-07 |
| PF13418.5 | Kelch_4 | 192 | 237 | 6.80E-08 |
| PF13418.5 | Kelch_4 | 243 | 287 | 5.90E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.370 |
| SRR2545915 | Juvenile tuber | 16.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.420 |
| SRR5643514 | five period of Gastrodia elata | 17.500 | |
| SRR5643515 | five period of Gastrodia elata | 17.260 | |
| SRR5643524 | five period of Gastrodia elata | 17.990 | |
| SRR5643525 | five period of Gastrodia elata | 22.180 | |
| SRR5643528 | five period of Gastrodia elata | 25.970 | |
| SRR5643658 | five period of Gastrodia elata | 19.290 | |
| SRR5643659 | five period of Gastrodia elata | 20.590 | |
| SRR5643660 | five period of Gastrodia elata | 22.570 | |
| SRR5643661 | five period of Gastrodia elata | 20.550 | |
| SRR5643662 | five period of Gastrodia elata | 20.840 | |
| SRR5643663 | five period of Gastrodia elata | 18.780 | |
| SRR5643664 | five period of Gastrodia elata | 18.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.06 |
| Juven | Juvenile tuber | 26.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.03 | |
| Mother_Juven | Mother tuber of Juvenile | 31.76 |