Gene detail

Detail information of GWHGAAEX018593/evm.TU.scaffold_96.9

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743837641\|ref\|XP_010936462.1\|	2.77E-22	PREDICTED: protein LONGIFOLIA 2-like [Elaeis guineensis]
Swissprot	tr\|Q9S823\|LNG2_ARATH	7.00E-09	Protein LONGIFOLIA 2
trEMBL	tr\|B9SNR4\|B9SNR4_RICCO	5.00E-21	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF34772.1}
TAIR	AT1G74160	2.00E-08	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000091	424911	428824	+

Transcript Sequence
>GWHTAAEX018593 CTTATATATATAATCTTTAAGAAACAGATAAAATGCACTCTTAATTTGACTGCATCTGAAAAAGAAAGCTCAGGTCTTGACTCTAATGGATTTCTCATTTAACTACATCACAAAGTGGCATTTGTAATGTCTTTGAAGGCCAGATGGCACTACTTACTTCAAAAAGATAAAACAAGCAATTAGATTGGTCTCAAACAGACTTTTCCTCAGTTTTTTTCCACAGCCCAAGCCAGCTCGTTGGGAAAGTCAGTAGAGAGACCAGTTCCTTGTCATTTTTTAATGATTTTCTTGTTATTTCTGTGTTTTTTATGAATGTTGTTAAGTGTAACTTTATAGCATAAGCTGATTGAGAAAATATTTAAATTCACTGATTTATAATAAAAATAATCCAATGTCGGCCATGTTTTTGAAATATAAAGAGATCCAGTTTCCATTTTATGTAACAGCAAGCCTCTTCAACCAGGTTGCTGACAGCAGTGAATTCAGCAAATGGAGCACAGATTTCCAAAAATAGAACAAAGAAGCTCTGAGCAACTATATTCACCTGGAAGAAGTACAAGGAAGATTTCAGATACAATATGCAAAGATCCCAACAGTGTTTCAATCAAAGAAAAAATAGAAGAAAAGATCAGCAGAAAGAATTTTCTGAATCCGGTTGACTCTCTGAGGCCTATTGATCTTTCCAAAATGAACTTTGAAGAATCACTTAGAATTTTGATCAAAGTTGAAGAATTTCCTGGGGTTTTCCACGGCAGGGAAATCGAACAAGCCATGGAAGACTCATTAAGCTATGGCTTCAGCCCCAGAGTCAAAACCCTTGTGAGAGAATTCGAAAAGAAAGCCAGCCAGAGAGCCTCTGAAGCTACAAATCCTAAGCAGAAGAAGGCAGTTGAATATGCTGAAGGCCGCATTAAGCAGATAATTGAATCATATCACAATGCTGTGGAGAAGAATATGCGGAAGCCTGAGTTCAACAAGAAAAATGAGGATTTGAAGCTCAGATGGGCGAGATCATTGAGCCCAACCAGAAAGCCAGAAGATTTAAAGGCTGCAAGTTTGGCCAGGAATCATGAAGGCAAGCCGGTGAGCAATTCATCCTTTCAATTTGTTAAGCTTGAAGGGGCATCTGGACTGAGAGAGATTAGAACAAATAACTTGAGCAACAATAGAAATATGGAATTTTTGAGTGGAGATGGAGGAGAAACTCACGCTGGAAAAGCAGCAAAGAGCTTTTATTCAACAACCAAAGAAGCGAGTGGAAGTATCGGAGACACTCCTACAAGCCCTAGGCTTCAGAACAAGAAGCTTGAACAAGAGAGAAAATGCCATCTCATGATTCCTTCTAACAGCTTAACAGAGATTCAAATGCAAAAAGGTAATAAGCAACCGTCAGAGTCAGTCCCTCCAAATAGTAAATTTATGCAGAAATCAAGCAACTCACTAGACCGAAATGGAAATGCTCATTTACTTCACAATACAAACGGATACACTGCTATCAATGCACCCACGGCATCAAACCAAAAGCAACATCAAATTATACAAAGAGAAATTCTTTCTGTTAAGGAACTTGGGAAGGTTGCCCCTCAGGTGTCAAGCCCCAACTCCGTAGTTGATACCTCCCTATACCAGGATGACCTGCCACTTTTCCCTTTATCAGTCTCAAATACGTCAAAAGACCACATTTTGGAACAGATGCATCTCCCTCAGAACCATATTTCAAGCTTCAAATCGAGCTTTCGGAAACCAAAGGGCAAAGACAAATCAACAACTGAACCTCCAGTATTCAATGAAATACCTCTGATGCATTATATGAATGATCCAAACAGCAGATATGTTGCTGAGGCGCTATTGTCATCTAGCCTTCTAGCTAAAGGCTCACCCAGGCAAACCCGTCCGAAGCAACTAAAACCAATCAAGCTGTTTAAAGCTGCCGAATTGAACTATACTCAGATTCTTTACAGGCAGCTTGTTTATGACGTGGTGAATGAGATTCTATGTAGAAAAATAGAGTCCTTTAATTCTAGTTATTACCATGATAACTTATTTGTACCGCATTGTTCAAGTCCACAGAGGATTTTTAAGGAACTTTGTTTAGAGGTGAAAAATCTTCAACGGAGTTCCGAGAATGGGAGTCTGAATGATAAGAAATCAATCTTTACTGAGGATTTACTTCGACAATCAAATGCATGGAACTGCTGCCAAAGAAAAGAAGTGTCTTTCATAGTATTAGAGATTGAAAGGTTCATTTCTGCAGATTTAATAAAAGAGGTTGTAAATAATGTGATTGCAGTTGTCACGAAACTCAACAAGAGATATGAAAGGATGTTGCTATTTTAA

Network for GWHGAAEX018593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14309.5	DUF4378	447	593	6.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.190
SRP064423	SRR2545915	Juvenile tuber	0.250
SRP108465	SRR5643513	five period of Gastrodia elata	0.730
	SRR5643514	five period of Gastrodia elata	0.840
	SRR5643515	five period of Gastrodia elata	0.770
	SRR5643524	five period of Gastrodia elata	0.880
	SRR5643525	five period of Gastrodia elata	0.440
	SRR5643528	five period of Gastrodia elata	0.300
	SRR5643658	five period of Gastrodia elata	0.150
	SRR5643659	five period of Gastrodia elata	0.270
	SRR5643660	five period of Gastrodia elata	0.210
	SRR5643661	five period of Gastrodia elata	0.030
	SRR5643662	five period of Gastrodia elata	0.380
	SRR5643663	five period of Gastrodia elata	0.230
	SRR5643664	five period of Gastrodia elata	0.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.750
SRP279888	Gastro	Gastrodia elata tuber	0.11
	Juven	Juvenile tuber	0.18
	Mother_Gastro	Mother tuber of Gastrodia elata	0.33
	Mother_Juven	Mother tuber of Juvenile	0.43