Gene detail

Detail information of GWHGAAEX018601/evm.TU.scaffold_96.25

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4249	3.00E-141	Uncharacterized conserved protein
nr	gi\|672135293\|ref\|XP_008791314.1\|	0	PREDICTED: UPF0420 protein C16orf58 homolog isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q84JB8\|RUS3_ARATH	0	Protein root UVB sensitive 3 {ECO:0000303\|PubMed:19515790}
trEMBL	tr\|W1NQL0\|W1NQL0_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERM98082.1}
TAIR	AT1G13770	3.00E-141	Protein of unknown function, DUF647

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000091	1016438	1059973	+

Transcript Sequence
>GWHTAAEX018601 GTATAAACTCGATGGAAATAGCTTCATCCCTCAGGCCGCCGGCAATCATGGTAGACGACAACTACAGTCATATTTGGGTCTTTATAATCGATCGAAAGCTCCTTGTCTTCACTTCAAGCACCGGCATCTATGGCAGAAGGCCACGCCGAAGGTAGCGAAGAGTTATCACCTTCACCTGCTCTTTCAACGATAACGCTGGAAGAATGGAGGGGATCTGCCTCCACCAAGCTCTCCAAGACCGCCACTCTTACTGCTGACATTTCCTCCTTTACTGTTATACGAACCGGGAGCCGATGGAGTGAGATCCGCGGAAAGATCCTGGAGGCTTTCGTGCCAGAGGGATTTCCAACTAGTGTCACACCAGATTATGTACCTTTCCAAATATGGGATTCCTTGCAGGGACTTTCAACTTACATACGGTCGATGCTTTCTACACAAGCATTGCTGAGTGCTATTGGAGTTGGCGAGAAATCTGCCACTGTCATTGGGGCCACGTTTCAGTGGTTTTTGAGGGATTTTACTGGGATGCTAGGAGGCATATTGTTTACATTTTATCAGGGTTCCAATCTTGATAGCAATGCCAAGATGTGGCGCTTGATTGCAGATTTTATGAACGATCTAGGCATGGTGATGGATCTCATTTCTCCATTATTTCCATCGGCATTAGTCTTAATAGTTTGCCTGGGAAGCGTGTCCAGATCATTTACTAGCGTTGCAAGCGGTGCAACAAGAGCTGCTCTGACACATCACTTTTCACTTGAGCATAATGCAGCTGATATATCTGCCAAGGAGGGTAGTCAAGAGACTATGGCAACTATGATTGGCATGGCAATTGGAATGCTTCTTGCTCATCTTACAAGGGGATGTCCTTTGGCAGTTTGGGTTTCATTTCTTTTCCTGACATTTTTTCATATGTATGCAAATTACAAGGCTGTAAGCTGCCTTTCATTGACAACGTTGAATAGTGAAAGAACCTCGTTACTGCTTCAGAATTTTTTGAAGAATGGCCAAGTTCTCTCCCCACAGCAAGTTTCAAGGATGGAGCATGTAATTCCTTCCTTGATCAATCCATGGAGATCAAGCAATGAGATATCACTACACCGACATGTATTATTAGGTTTCAAAGTATCTTGCCTTAATCTTCATGACATGGTGGAGCTATCAGGATCGATTAATTCTCATTACAAAACAGTTAAATATTTGCTGTTGGAGAGGAAAGGTGCTGTTCAAGCTATAATCCATAAACAGGCGACCCCACCTGATATTTTGCAGTCTTTCATTCATGCTCTTGTCATTACAAGCCTAACTGAGCAAAGCAAGGATGTGCACACTGAAAGTTGCTTGTGGATGGATGAGAATTACAATGGTTTTATCGTAAAGCTTAGGACCGCGGGTTGGGAGGCTGAGCGGCTTTTGACGCCGTCCATCGCCTGGAGGGCCGAATGGGATCTCTCCTCTTCTCTATTCAACAAGAAGATCAATTAAGTGCTTATTATTATGAGAGTTTTATTAAGCTGAACTTTTTTTTGGAAGATACATATGTGTAGCCAGCAGAATCTGAAGTTTTGACATATCATTAATCTAGGACTTTAGCCACTAAATCACAACACTAATCATATCAAGCTGAAAATTACTTGATTATTATTCTTATTAGTATATTTAAAAATTGGTGATGGTACTATTTGAGTACAATATTTTTTTTTTTTTTGGAAATATTTAAATAAATGTGC

Network for GWHGAAEX018601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04884.13	DUF647	55	292	9.90E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.950
SRP064423	SRR2545915	Juvenile tuber	5.720
SRP108465	SRR5643513	five period of Gastrodia elata	6.320
	SRR5643514	five period of Gastrodia elata	8.460
	SRR5643515	five period of Gastrodia elata	5.720
	SRR5643524	five period of Gastrodia elata	8.090
	SRR5643525	five period of Gastrodia elata	3.490
	SRR5643528	five period of Gastrodia elata	3.610
	SRR5643658	five period of Gastrodia elata	3.950
	SRR5643659	five period of Gastrodia elata	4.030
	SRR5643660	five period of Gastrodia elata	5.090
	SRR5643661	five period of Gastrodia elata	3.370
	SRR5643662	five period of Gastrodia elata	2.680
	SRR5643663	five period of Gastrodia elata	3.580
	SRR5643664	five period of Gastrodia elata	2.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.960
SRP279888	Gastro	Gastrodia elata tuber	4.14
	Juven	Juvenile tuber	4.69
	Mother_Gastro	Mother tuber of Gastrodia elata	1.88
	Mother_Juven	Mother tuber of Juvenile	2.66