Detail information of GWHGAAEX018609/evm.TU.scaffold_96.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|16081900|ref|NP_394304.1| | 1.00E-10 | molybdopterin biosynthesis protein moeB [Thermoplasma acidophilum DSM 1728] |
| KOG | KOG2337 | 0 | Ubiquitin activating E1 enzyme-like protein |
| nr | gi|743797033|ref|XP_010924881.1| | 0 | PREDICTED: ubiquitin-like modifier-activating enzyme atg7 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q94CD5|ATG7_ARATH | 0 | Ubiquitin-like modifier-activating enzyme atg7 |
| trEMBL | tr|F6HM90|F6HM90_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55678.1} |
| TAIR | AT5G45900 | 0 | ThiF family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000091 | 1896963 | 1921561 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018609
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16420.4 | ATG7_N | 30 | 342 | 1.10E-82 |
| PF00899.20 | ThiF | 369 | 654 | 4.90E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08337 | ATG7 | Autophagy - animal | map04140 |
| Autophagy - yeast | map04138 | ||
| Autophagy - other | map04136 | ||
| Ferroptosis | map04216 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006914 | Biological Process | autophagy |
| GO:0008641 | Molecular Function | small protein activating enzyme activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.510 |
| SRR2545915 | Juvenile tuber | 56.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.340 |
| SRR5643514 | five period of Gastrodia elata | 30.840 | |
| SRR5643515 | five period of Gastrodia elata | 26.580 | |
| SRR5643524 | five period of Gastrodia elata | 31.290 | |
| SRR5643525 | five period of Gastrodia elata | 29.180 | |
| SRR5643528 | five period of Gastrodia elata | 28.730 | |
| SRR5643658 | five period of Gastrodia elata | 34.560 | |
| SRR5643659 | five period of Gastrodia elata | 34.000 | |
| SRR5643660 | five period of Gastrodia elata | 34.980 | |
| SRR5643661 | five period of Gastrodia elata | 30.090 | |
| SRR5643662 | five period of Gastrodia elata | 29.720 | |
| SRR5643663 | five period of Gastrodia elata | 32.860 | |
| SRR5643664 | five period of Gastrodia elata | 29.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.67 |
| Juven | Juvenile tuber | 58.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.10 | |
| Mother_Juven | Mother tuber of Juvenile | 54.12 |