Detail information of GWHGAAEX018613/evm.TU.scaffold_96.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194334049|ref|YP_002015909.1| | 2.00E-06 | RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271] |
| KOG | KOG0533 | 5.00E-48 | RRM motif-containing protein |
| nr | gi|695003883|ref|XP_009387818.1| | 9.02E-91 | PREDICTED: THO complex subunit 4D-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6NQ72|THO4D_ARATH | 4.00E-50 | THO complex subunit 4D |
| trEMBL | tr|M0S964|M0S964_MUSAM | 8.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18730_001} |
| TAIR | AT5G37720 | 5.00E-48 | ALWAYS EARLY 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000091 | 2118403 | 2151421 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018613
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 92 | 160 | 3.10E-14 |
| PF13865.5 | FoP_duplication | 214 | 253 | 3.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12881 | THOC4, ALY | Spliceosome | map03040 |
| RNA transport | map03013 | ||
| mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.170 |
| SRR2545915 | Juvenile tuber | 28.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.980 |
| SRR5643514 | five period of Gastrodia elata | 23.560 | |
| SRR5643515 | five period of Gastrodia elata | 23.160 | |
| SRR5643524 | five period of Gastrodia elata | 21.830 | |
| SRR5643525 | five period of Gastrodia elata | 17.730 | |
| SRR5643528 | five period of Gastrodia elata | 18.150 | |
| SRR5643658 | five period of Gastrodia elata | 19.990 | |
| SRR5643659 | five period of Gastrodia elata | 25.080 | |
| SRR5643660 | five period of Gastrodia elata | 23.610 | |
| SRR5643661 | five period of Gastrodia elata | 24.280 | |
| SRR5643662 | five period of Gastrodia elata | 24.990 | |
| SRR5643663 | five period of Gastrodia elata | 25.840 | |
| SRR5643664 | five period of Gastrodia elata | 25.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.83 |
| Juven | Juvenile tuber | 39.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.93 | |
| Mother_Juven | Mother tuber of Juvenile | 36.89 |