Detail information of GWHGAAEX018614/evm.TU.scaffold_96.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357393893|ref|YP_004908734.1| | 4.00E-88 | putative endoglucanase precursor [Kitasatospora setae KM-6054] |
| nr | gi|672167855|ref|XP_008803904.1| | 0 | PREDICTED: endoglucanase 17-like [Phoenix dactylifera] |
| Swissprot | tr|Q652F9|GUN17_ORYSJ | 0 | Endoglucanase 17 (Precursor) |
| trEMBL | tr|A2YBE2|A2YBE2_ORYSI | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
| TAIR | AT1G23210 | 0 | glycosyl hydrolase 9B6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000091 | 2185927 | 2189847 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018614
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 28 | 484 | 5.10E-134 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.790 |
| SRR2545915 | Juvenile tuber | 4.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.520 |
| SRR5643514 | five period of Gastrodia elata | 14.330 | |
| SRR5643515 | five period of Gastrodia elata | 21.680 | |
| SRR5643524 | five period of Gastrodia elata | 9.540 | |
| SRR5643525 | five period of Gastrodia elata | 19.360 | |
| SRR5643528 | five period of Gastrodia elata | 8.440 | |
| SRR5643658 | five period of Gastrodia elata | 6.510 | |
| SRR5643659 | five period of Gastrodia elata | 12.460 | |
| SRR5643660 | five period of Gastrodia elata | 7.030 | |
| SRR5643661 | five period of Gastrodia elata | 14.020 | |
| SRR5643662 | five period of Gastrodia elata | 7.750 | |
| SRR5643663 | five period of Gastrodia elata | 9.640 | |
| SRR5643664 | five period of Gastrodia elata | 12.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.76 |
| Juven | Juvenile tuber | 4.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.58 | |
| Mother_Juven | Mother tuber of Juvenile | 3.66 |