Detail information of GWHGAAEX018621/evm.TU.scaffold_96.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695058659|ref|XP_009417650.1| | 1.47E-175 | PREDICTED: transcription factor HBP-1b(c38)-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P23923|HBP1B_WHEAT | 4.00E-146 | Transcription factor HBP-1b(c38) |
| trEMBL | tr|M0U0L3|M0U0L3_MUSAM | 5.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P15550_001} |
| TAIR | AT3G12250 | 8.00E-135 | TGACG motif-binding factor 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000091 | 3290965 | 3310496 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018621
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 174 | 209 | 5.30E-07 |
| PF14144.5 | DOG1 | 259 | 335 | 2.20E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14431 | TGA | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.950 |
| SRR2545915 | Juvenile tuber | 3.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.960 |
| SRR5643514 | five period of Gastrodia elata | 3.370 | |
| SRR5643515 | five period of Gastrodia elata | 2.360 | |
| SRR5643524 | five period of Gastrodia elata | 2.840 | |
| SRR5643525 | five period of Gastrodia elata | 0.600 | |
| SRR5643528 | five period of Gastrodia elata | 0.470 | |
| SRR5643658 | five period of Gastrodia elata | 0.240 | |
| SRR5643659 | five period of Gastrodia elata | 0.540 | |
| SRR5643660 | five period of Gastrodia elata | 0.970 | |
| SRR5643661 | five period of Gastrodia elata | 0.640 | |
| SRR5643662 | five period of Gastrodia elata | 0.450 | |
| SRR5643663 | five period of Gastrodia elata | 0.420 | |
| SRR5643664 | five period of Gastrodia elata | 0.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.06 |
| Juven | Juvenile tuber | 2.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.72 |