Detail information of GWHGAAEX018623/evm.TU.scaffold_96.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196597|ref|YP_003267806.1|5.00E-133cystathionine gamma-synthase [Haliangium ochraceum DSM 14365]
KOGKOG00530Cystathionine beta-lyases/cystathionine gamma-synthases
nrgi|694999868|ref|XP_009409044.1|0PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|P55217|CGS1_ARATH0Cystathionine gamma-synthase 1, chloroplastic {ECO:0000305} (Precursor)
trEMBLtr|M0S1Y3|M0S1Y3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21750_001}
TAIRAT3G011200Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009134965943517069-
Transcript Sequence

Network for GWHGAAEX018623

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01053.19Cys_Met_Meta_PP1535367.40E-136
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01739metB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0019346Biological Processtranssulfuration
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms86.840
SRR2545915Juvenile tuber112.800
SRP108465SRR5643513five period of Gastrodia elata101.890
SRR5643514five period of Gastrodia elata99.840
SRR5643515five period of Gastrodia elata111.390
SRR5643524five period of Gastrodia elata100.490
SRR5643525five period of Gastrodia elata100.720
SRR5643528five period of Gastrodia elata97.530
SRR5643658five period of Gastrodia elata85.600
SRR5643659five period of Gastrodia elata135.510
SRR5643660five period of Gastrodia elata131.960
SRR5643661five period of Gastrodia elata148.390
SRR5643662five period of Gastrodia elata113.790
SRR5643663five period of Gastrodia elata153.460
SRR5643664five period of Gastrodia elata105.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_177.310
SRR6049655Rhizomagastrodiae_C368-T10_good_197.060
SRR6049656Rhizomagastrodiae_C368-T07_good_187.550
SRR6049657Rhizomagastrodiae_C368-T07_good_177.160
SRR6049658Rhizomagastrodiae_C368-T04_good_171.700
SRR6049659Rhizomagastrodiae_C368-T04_good_165.260
SRR6049660Rhizomagastrodiae_C368-T01_good_178.870
SRR6049661Rhizomagastrodiae_C368-T04_good_184.590
SRR6049662Rhizomagastrodiae_C368-T01_good_185.240
SRR6049663Rhizomagastrodiae_C368-T01_good_175.380
SRR6049664Rhizomagastrodiae_C368-T10_good_176.270
SRR6049665Rhizomagastrodiae_C368-T10_good_176.270
SRP279888GastroGastrodia elata tuber 101.97
JuvenJuvenile tuber91.25
Mother_GastroMother tuber of Gastrodia elata 92.87
Mother_JuvenMother tuber of Juvenile 90.09