Detail information of GWHGAAEX018631/evm.TU.scaffold_97.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743813520|ref|XP_010929744.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LJR6|PP253_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial (Precursor) |
| trEMBL | tr|M0XE60|M0XE60_HORVD | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_59294.1} |
| TAIR | AT3G25060 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 158499 | 183032 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018631
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 71 | 97 | 0.06 |
| PF01535.19 | PPR | 144 | 169 | 0.0002 |
| PF01535.19 | PPR | 172 | 202 | 1.00E-06 |
| PF01535.19 | PPR | 245 | 272 | 0.048 |
| PF01535.19 | PPR | 273 | 303 | 1.90E-05 |
| PF01535.19 | PPR | 345 | 368 | 0.019 |
| PF13041.5 | PPR_2 | 371 | 419 | 2.10E-10 |
| PF01535.19 | PPR | 447 | 470 | 0.1 |
| PF14432.5 | DYW_deaminase | 545 | 668 | 5.10E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.730 |
| SRR2545915 | Juvenile tuber | 4.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.500 |
| SRR5643514 | five period of Gastrodia elata | 2.690 | |
| SRR5643515 | five period of Gastrodia elata | 3.050 | |
| SRR5643524 | five period of Gastrodia elata | 3.410 | |
| SRR5643525 | five period of Gastrodia elata | 1.150 | |
| SRR5643528 | five period of Gastrodia elata | 1.080 | |
| SRR5643658 | five period of Gastrodia elata | 1.000 | |
| SRR5643659 | five period of Gastrodia elata | 2.630 | |
| SRR5643660 | five period of Gastrodia elata | 2.760 | |
| SRR5643661 | five period of Gastrodia elata | 2.970 | |
| SRR5643662 | five period of Gastrodia elata | 3.050 | |
| SRR5643663 | five period of Gastrodia elata | 2.560 | |
| SRR5643664 | five period of Gastrodia elata | 4.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.59 |
| Juven | Juvenile tuber | 3.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.92 | |
| Mother_Juven | Mother tuber of Juvenile | 2.36 |