Detail information of GWHGAAEX018633/evm.TU.scaffold_97.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|153008266|ref|YP_001369481.1|8.00E-132succinyl-CoA synthetase subunit beta [Ochrobactrum anthropi ATCC 49188]
KOGKOG27990Succinyl-CoA synthetase, beta subunit
nrgi|743829950|ref|XP_010934289.1|0PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Elaeis guineensis]
Swissprottr|Q6K9N6|SUCB_ORYSJ0Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Precursor)
trEMBLtr|A5BF93|A5BF93_VITVI0Succinyl-CoA ligase subunit beta {ECO:0000256|RuleBase:RU361258}
TAIRAT2G204200ATP citrate lyase (ACL) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000102213844248123+
Transcript Sequence

Network for GWHGAAEX018633

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08442.9ATP-grasp_2292371.10E-59
PF00549.18Ligase_CoA2974171.10E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01900LSC2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Propanoate metabolismmap00640

Gene Ontology

GO term OntologyName
GO:0006099Biological Processtricarboxylic acid cycle
GO:0003824Molecular Functioncatalytic activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms114.280
SRR2545915Juvenile tuber147.920
SRP108465SRR5643513five period of Gastrodia elata137.920
SRR5643514five period of Gastrodia elata178.090
SRR5643515five period of Gastrodia elata141.460
SRR5643524five period of Gastrodia elata174.380
SRR5643525five period of Gastrodia elata105.070
SRR5643528five period of Gastrodia elata133.260
SRR5643658five period of Gastrodia elata88.390
SRR5643659five period of Gastrodia elata124.740
SRR5643660five period of Gastrodia elata120.940
SRR5643661five period of Gastrodia elata132.500
SRR5643662five period of Gastrodia elata118.590
SRR5643663five period of Gastrodia elata128.000
SRR5643664five period of Gastrodia elata114.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1130.620
SRR6049655Rhizomagastrodiae_C368-T10_good_194.410
SRR6049656Rhizomagastrodiae_C368-T07_good_1146.490
SRR6049657Rhizomagastrodiae_C368-T07_good_1113.510
SRR6049658Rhizomagastrodiae_C368-T04_good_1109.540
SRR6049659Rhizomagastrodiae_C368-T04_good_1103.140
SRR6049660Rhizomagastrodiae_C368-T01_good_1105.850
SRR6049661Rhizomagastrodiae_C368-T04_good_1113.850
SRR6049662Rhizomagastrodiae_C368-T01_good_1179.640
SRR6049663Rhizomagastrodiae_C368-T01_good_1143.660
SRR6049664Rhizomagastrodiae_C368-T10_good_1191.870
SRR6049665Rhizomagastrodiae_C368-T10_good_1191.870
SRP279888GastroGastrodia elata tuber 121.50
JuvenJuvenile tuber142.33
Mother_GastroMother tuber of Gastrodia elata 71.09
Mother_JuvenMother tuber of Juvenile 93.31