Detail information of GWHGAAEX018634/evm.TU.scaffold_97.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32982.00E-56DNA-directed RNA polymerase subunit E'
nrgi|695018766|ref|XP_009396359.1|4.83E-81PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Musa acuminata subsp. malaccensis]
Swissprottr|A6QRA1|NRPE7_ARATH4.00E-62DNA-directed RNA polymerase V subunit 7
trEMBLtr|B8AZD0|B8AZD0_ORYSI2.00E-79Putative uncharacterized protein {ECO:0000313|EMBL:EEC78737.1}
TAIRAT4G146602.00E-56RNA polymerase Rpb7-like, N-terminal domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000102254718259616+
Transcript Sequence

Network for GWHGAAEX018634

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03876.16SHS2_Rpb7-N12803.60E-06
PF08292.11RNA_pol_Rbc25841611.20E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.580
SRR2545915Juvenile tuber13.320
SRP108465SRR5643513five period of Gastrodia elata20.230
SRR5643514five period of Gastrodia elata20.700
SRR5643515five period of Gastrodia elata16.370
SRR5643524five period of Gastrodia elata20.420
SRR5643525five period of Gastrodia elata22.480
SRR5643528five period of Gastrodia elata24.430
SRR5643658five period of Gastrodia elata16.890
SRR5643659five period of Gastrodia elata28.360
SRR5643660five period of Gastrodia elata30.370
SRR5643661five period of Gastrodia elata32.020
SRR5643662five period of Gastrodia elata30.750
SRR5643663five period of Gastrodia elata26.360
SRR5643664five period of Gastrodia elata22.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.530
SRR6049655Rhizomagastrodiae_C368-T10_good_125.930
SRR6049656Rhizomagastrodiae_C368-T07_good_124.930
SRR6049657Rhizomagastrodiae_C368-T07_good_118.760
SRR6049658Rhizomagastrodiae_C368-T04_good_117.080
SRR6049659Rhizomagastrodiae_C368-T04_good_117.070
SRR6049660Rhizomagastrodiae_C368-T01_good_122.510
SRR6049661Rhizomagastrodiae_C368-T04_good_119.610
SRR6049662Rhizomagastrodiae_C368-T01_good_128.520
SRR6049663Rhizomagastrodiae_C368-T01_good_123.010
SRR6049664Rhizomagastrodiae_C368-T10_good_125.470
SRR6049665Rhizomagastrodiae_C368-T10_good_125.470
SRP279888GastroGastrodia elata tuber 29.12
JuvenJuvenile tuber22.80
Mother_GastroMother tuber of Gastrodia elata 18.08
Mother_JuvenMother tuber of Juvenile 18.27