Detail information of GWHGAAEX018636/evm.TU.scaffold_97.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1246 | 0 | DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain |
| nr | gi|694995191|ref|XP_009420230.1| | 0 | PREDICTED: lysine-specific demethylase JMJ703-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q53WJ1|JM703_ORYSJ | 0 | Lysine-specific demethylase JMJ703 |
| trEMBL | tr|M0RXC5|M0RXC5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P05670_001} |
| TAIR | AT1G08620 | 0 | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 323764 | 347556 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018636
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02375.16 | JmjN | 139 | 172 | 3.80E-16 |
| PF02373.21 | JmjC | 378 | 493 | 8.80E-44 |
| PF02928.15 | zf-C5HC2 | 600 | 650 | 2.80E-13 |
| PF05964.13 | FYRN | 1052 | 1100 | 1.40E-10 |
| PF05965.13 | FYRC | 1107 | 1193 | 8.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.880 |
| SRR2545915 | Juvenile tuber | 21.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.910 |
| SRR5643514 | five period of Gastrodia elata | 15.760 | |
| SRR5643515 | five period of Gastrodia elata | 14.600 | |
| SRR5643524 | five period of Gastrodia elata | 15.230 | |
| SRR5643525 | five period of Gastrodia elata | 16.320 | |
| SRR5643528 | five period of Gastrodia elata | 15.100 | |
| SRR5643658 | five period of Gastrodia elata | 14.420 | |
| SRR5643659 | five period of Gastrodia elata | 17.110 | |
| SRR5643660 | five period of Gastrodia elata | 18.370 | |
| SRR5643661 | five period of Gastrodia elata | 16.830 | |
| SRR5643662 | five period of Gastrodia elata | 16.780 | |
| SRR5643663 | five period of Gastrodia elata | 18.070 | |
| SRR5643664 | five period of Gastrodia elata | 17.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.05 |
| Juven | Juvenile tuber | 18.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.13 | |
| Mother_Juven | Mother tuber of Juvenile | 22.56 |