Detail information of GWHGAAEX018641/evm.TU.scaffold_97.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34842.00E-49Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins
nrgi|672184064|ref|XP_008812331.1|1.48E-53PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Phoenix dactylifera]
Swissprottr|Q9SJJ5|CKS2_ARATH5.00E-50Cyclin-dependent kinases regulatory subunit 2
trEMBLtr|M0ZI38|M0ZI38_SOLTU1.00E-52Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}
TAIRAT2G279702.00E-49CDK-subunit 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000102481929483022+
Transcript Sequence

Network for GWHGAAEX018641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01111.18CKS4702.90E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02219CKS1 Cell cycle - yeast map04111

Gene Ontology

GO term OntologyName
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.690
SRR2545915Juvenile tuber16.910
SRP108465SRR5643513five period of Gastrodia elata17.890
SRR5643514five period of Gastrodia elata24.690
SRR5643515five period of Gastrodia elata17.280
SRR5643524five period of Gastrodia elata25.180
SRR5643525five period of Gastrodia elata6.980
SRR5643528five period of Gastrodia elata4.090
SRR5643658five period of Gastrodia elata9.150
SRR5643659five period of Gastrodia elata17.160
SRR5643660five period of Gastrodia elata14.250
SRR5643661five period of Gastrodia elata17.250
SRR5643662five period of Gastrodia elata14.720
SRR5643663five period of Gastrodia elata13.640
SRR5643664five period of Gastrodia elata15.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.270
SRR6049655Rhizomagastrodiae_C368-T10_good_155.280
SRR6049656Rhizomagastrodiae_C368-T07_good_119.480
SRR6049657Rhizomagastrodiae_C368-T07_good_122.990
SRR6049658Rhizomagastrodiae_C368-T04_good_119.640
SRR6049659Rhizomagastrodiae_C368-T04_good_19.450
SRR6049660Rhizomagastrodiae_C368-T01_good_114.370
SRR6049661Rhizomagastrodiae_C368-T04_good_126.020
SRR6049662Rhizomagastrodiae_C368-T01_good_143.450
SRR6049663Rhizomagastrodiae_C368-T01_good_115.050
SRR6049664Rhizomagastrodiae_C368-T10_good_128.630
SRR6049665Rhizomagastrodiae_C368-T10_good_128.630
SRP279888GastroGastrodia elata tuber 17.84
JuvenJuvenile tuber7.07
Mother_GastroMother tuber of Gastrodia elata 19.24
Mother_JuvenMother tuber of Juvenile 3.71