Detail information of GWHGAAEX018649/evm.TU.scaffold_97.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|719999764|ref|XP_010255823.1|1.13E-131PREDICTED: growth-regulating factor 4-like [Nelumbo nucifera]
Swissprottr|Q6ZIK5|GRF4_ORYSJ1.00E-91Growth-regulating factor 4
trEMBLtr|U5D2P7|U5D2P7_AMBTC5.00E-121Uncharacterized protein {ECO:0000313|EMBL:ERN15677.1}
TAIRAT3G139603.00E-48growth-regulating factor 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000102703555707838+
Transcript Sequence

Network for GWHGAAEX018649

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08880.10QLQ15494.80E-16
PF08879.9WRC771191.10E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005524Molecular FunctionATP binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.490
SRR2545915Juvenile tuber6.290
SRP108465SRR5643513five period of Gastrodia elata6.270
SRR5643514five period of Gastrodia elata6.700
SRR5643515five period of Gastrodia elata7.900
SRR5643524five period of Gastrodia elata6.260
SRR5643525five period of Gastrodia elata1.040
SRR5643528five period of Gastrodia elata0.890
SRR5643658five period of Gastrodia elata1.010
SRR5643659five period of Gastrodia elata8.820
SRR5643660five period of Gastrodia elata7.030
SRR5643661five period of Gastrodia elata8.980
SRR5643662five period of Gastrodia elata4.750
SRR5643663five period of Gastrodia elata6.520
SRR5643664five period of Gastrodia elata5.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.960
SRR6049655Rhizomagastrodiae_C368-T10_good_18.990
SRR6049656Rhizomagastrodiae_C368-T07_good_15.870
SRR6049657Rhizomagastrodiae_C368-T07_good_18.610
SRR6049658Rhizomagastrodiae_C368-T04_good_16.630
SRR6049659Rhizomagastrodiae_C368-T04_good_16.230
SRR6049660Rhizomagastrodiae_C368-T01_good_110.760
SRR6049661Rhizomagastrodiae_C368-T04_good_111.930
SRR6049662Rhizomagastrodiae_C368-T01_good_110.150
SRR6049663Rhizomagastrodiae_C368-T01_good_17.220
SRR6049664Rhizomagastrodiae_C368-T10_good_15.520
SRR6049665Rhizomagastrodiae_C368-T10_good_15.520
SRP279888GastroGastrodia elata tuber 6.76
JuvenJuvenile tuber4.58
Mother_GastroMother tuber of Gastrodia elata 1.71
Mother_JuvenMother tuber of Juvenile 3.81