Detail information of GWHGAAEX018654/evm.TU.scaffold_97.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32954.00E-11760S Ribosomal protein L13
nrgi|743872997|ref|XP_010906706.1|8.97E-136PREDICTED: 60S ribosomal protein L13-1-like [Elaeis guineensis]
Swissprottr|P41128|RL131_BRANA3.00E-12360S ribosomal protein L13-1
trEMBLtr|B3TM24|B3TM24_ELAGV2.00E-13560S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}
TAIRAT3G490104.00E-117breast basic conserved 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000102751917754252+
Transcript Sequence

Network for GWHGAAEX018654

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01294.17Ribosomal_L13e402182.90E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02873RP-L13e, RPL13 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms289.400
SRR2545915Juvenile tuber309.780
SRP108465SRR5643513five period of Gastrodia elata369.600
SRR5643514five period of Gastrodia elata349.070
SRR5643515five period of Gastrodia elata341.700
SRR5643524five period of Gastrodia elata342.990
SRR5643525five period of Gastrodia elata136.000
SRR5643528five period of Gastrodia elata188.920
SRR5643658five period of Gastrodia elata128.210
SRR5643659five period of Gastrodia elata428.790
SRR5643660five period of Gastrodia elata448.710
SRR5643661five period of Gastrodia elata551.140
SRR5643662five period of Gastrodia elata543.090
SRR5643663five period of Gastrodia elata429.190
SRR5643664five period of Gastrodia elata585.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1551.340
SRR6049655Rhizomagastrodiae_C368-T10_good_1545.400
SRR6049656Rhizomagastrodiae_C368-T07_good_1590.260
SRR6049657Rhizomagastrodiae_C368-T07_good_1546.140
SRR6049658Rhizomagastrodiae_C368-T04_good_1503.590
SRR6049659Rhizomagastrodiae_C368-T04_good_1502.500
SRR6049660Rhizomagastrodiae_C368-T01_good_1578.480
SRR6049661Rhizomagastrodiae_C368-T04_good_1525.370
SRR6049662Rhizomagastrodiae_C368-T01_good_1601.220
SRR6049663Rhizomagastrodiae_C368-T01_good_1589.170
SRR6049664Rhizomagastrodiae_C368-T10_good_1612.710
SRR6049665Rhizomagastrodiae_C368-T10_good_1612.710
SRP279888GastroGastrodia elata tuber 391.59
JuvenJuvenile tuber268.98
Mother_GastroMother tuber of Gastrodia elata 151.05
Mother_JuvenMother tuber of Juvenile 153.57