Detail information of GWHGAAEX018658/evm.TU.scaffold_97.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672171848|ref|XP_008806000.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Phoenix dactylifera] |
| Swissprot | tr|P93005|PP181_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g33680 |
| trEMBL | tr|E0CQU2|E0CQU2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI18896.3} |
| TAIR | AT2G33680 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 910036 | 912249 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018658
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 46 | 70 | 0.014 |
| PF01535.19 | PPR | 77 | 108 | 0.0094 |
| PF01535.19 | PPR | 159 | 184 | 0.0066 |
| PF01535.19 | PPR | 187 | 213 | 0.00052 |
| PF01535.19 | PPR | 262 | 281 | 0.45 |
| PF13041.5 | PPR_2 | 290 | 335 | 5.10E-10 |
| PF13041.5 | PPR_2 | 389 | 436 | 4.00E-11 |
| PF13041.5 | PPR_2 | 490 | 536 | 1.70E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.370 |
| SRR2545915 | Juvenile tuber | 2.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.810 |
| SRR5643514 | five period of Gastrodia elata | 2.020 | |
| SRR5643515 | five period of Gastrodia elata | 2.850 | |
| SRR5643524 | five period of Gastrodia elata | 2.050 | |
| SRR5643525 | five period of Gastrodia elata | 1.880 | |
| SRR5643528 | five period of Gastrodia elata | 1.490 | |
| SRR5643658 | five period of Gastrodia elata | 0.880 | |
| SRR5643659 | five period of Gastrodia elata | 4.690 | |
| SRR5643660 | five period of Gastrodia elata | 5.390 | |
| SRR5643661 | five period of Gastrodia elata | 4.950 | |
| SRR5643662 | five period of Gastrodia elata | 3.930 | |
| SRR5643663 | five period of Gastrodia elata | 4.080 | |
| SRR5643664 | five period of Gastrodia elata | 3.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.84 |
| Juven | Juvenile tuber | 3.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.94 | |
| Mother_Juven | Mother tuber of Juvenile | 1.25 |