Detail information of GWHGAAEX018662/evm.TU.scaffold_97.41


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|110834109|ref|YP_692968.1|7.00E-121malate dehydrogenase [Alcanivorax borkumensis SK2]
KOGKOG14960Malate dehydrogenase
nrgi|695024502|ref|XP_009399469.1|0PREDICTED: malate dehydrogenase-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FSF0|MDH_TOBAC0Malate dehydrogenase
trEMBLtr|M0SVG9|M0SVG9_MUSAM0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}
TAIRAT5G433300Lactate/malate dehydrogenase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000102987049993556+
Transcript Sequence

Network for GWHGAAEX018662

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.22Ldh_1_N61532.70E-33
PF02866.17Ldh_1_C1573251.10E-36
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00025MDH1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0019752Biological Processcarboxylic acid metabolic process
GO:0016491Molecular Functionoxidoreductase activity
GO:0016615Molecular Functionmalate dehydrogenase activity
GO:0003824Molecular Functioncatalytic activity
GO:0030060Molecular FunctionL-malate dehydrogenase activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms698.750
SRR2545915Juvenile tuber895.540
SRP108465SRR5643513five period of Gastrodia elata842.230
SRR5643514five period of Gastrodia elata967.320
SRR5643515five period of Gastrodia elata802.750
SRR5643524five period of Gastrodia elata931.250
SRR5643525five period of Gastrodia elata569.510
SRR5643528five period of Gastrodia elata615.220
SRR5643658five period of Gastrodia elata466.480
SRR5643659five period of Gastrodia elata1382.950
SRR5643660five period of Gastrodia elata1495.940
SRR5643661five period of Gastrodia elata1627.330
SRR5643662five period of Gastrodia elata2057.650
SRR5643663five period of Gastrodia elata1781.660
SRR5643664five period of Gastrodia elata2443.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11032.590
SRR6049655Rhizomagastrodiae_C368-T10_good_1905.340
SRR6049656Rhizomagastrodiae_C368-T07_good_1902.620
SRR6049657Rhizomagastrodiae_C368-T07_good_1809.880
SRR6049658Rhizomagastrodiae_C368-T04_good_1396.340
SRR6049659Rhizomagastrodiae_C368-T04_good_1363.730
SRR6049660Rhizomagastrodiae_C368-T01_good_1494.950
SRR6049661Rhizomagastrodiae_C368-T04_good_1413.200
SRR6049662Rhizomagastrodiae_C368-T01_good_1681.320
SRR6049663Rhizomagastrodiae_C368-T01_good_1522.340
SRR6049664Rhizomagastrodiae_C368-T10_good_11028.890
SRR6049665Rhizomagastrodiae_C368-T10_good_11028.890
SRP279888GastroGastrodia elata tuber 820.79
JuvenJuvenile tuber1,017.47
Mother_GastroMother tuber of Gastrodia elata 361.18
Mother_JuvenMother tuber of Juvenile 718.40