Detail information of GWHGAAEX018663/evm.TU.scaffold_97.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|317123691|ref|YP_004097803.1| | 2.00E-93 | peptidase S8 and S53 subtilisin kexin sedolisin [Intrasporangium calvum DSM 43043] |
| nr | gi|743861785|ref|XP_010943376.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SDD1 [Elaeis guineensis] |
| Swissprot | tr|O64495|SDD1_ARATH | 9.00E-163 | Subtilisin-like protease SDD1 {ECO:0000303|PubMed:10809670} (Precursor) |
| trEMBL | tr|A0A0A0KKE3|A0A0A0KKE3_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN50165.1} |
| TAIR | AT1G04110 | 3.00E-162 | Subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 993685 | 996293 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018663
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 49 | 117 | 5.00E-09 |
| PF00082.21 | Peptidase_S8 | 153 | 569 | 1.80E-44 |
| PF02225.21 | PA | 374 | 453 | 2.80E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.510 |
| SRR2545915 | Juvenile tuber | 0.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.830 |
| SRR5643514 | five period of Gastrodia elata | 6.310 | |
| SRR5643515 | five period of Gastrodia elata | 11.940 | |
| SRR5643524 | five period of Gastrodia elata | 8.460 | |
| SRR5643525 | five period of Gastrodia elata | 0.990 | |
| SRR5643528 | five period of Gastrodia elata | 0.340 | |
| SRR5643658 | five period of Gastrodia elata | 0.490 | |
| SRR5643659 | five period of Gastrodia elata | 1.150 | |
| SRR5643660 | five period of Gastrodia elata | 0.330 | |
| SRR5643661 | five period of Gastrodia elata | 3.690 | |
| SRR5643662 | five period of Gastrodia elata | 1.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.880 | |
| SRR5643664 | five period of Gastrodia elata | 0.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.53 |
| Juven | Juvenile tuber | 1.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.39 | |
| Mother_Juven | Mother tuber of Juvenile | 3.07 |