Gene detail

Detail information of GWHGAAEX018665/CADD01478.2.gene

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|313184298\|emb\|CBL94163.1\|	5.55E-07	putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
trEMBL	tr\|E4Z8N8\|E4Z8N8_MALDO	2.00E-07	Putative RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313\|EMBL:CBL94163.1}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	1202785	1206108	+

Transcript Sequence
>GWHTAAEX018665 GCTCAATATAATCCAGTAGAATATTGAAAATCAGTTTAATATTCAAGCATTTTAACTCAACACTAACCTAGGTTTAAAAATTTTAACGCTGACATTTGCACTTACATTTATATAAAAAACTACATTTCCGGGCCGACGCCGGGTCCAACACGCCTCACTGGGATAGTAGCTGATGCCGCGATTTTCCTTCGAGCAAGCGTTGGCCGAAAGTTTGGATCTTCCTGTGGTGGACTTGGCCTCAACTGCTTCTTCCTAATCAATTCGCAAGGTCTCGAATCCATATAAATATTGGTGAAATCCCTAAATAAATTTTTTATTTCGTTGTTAATCCGCGCTGACTTGTTAATTAGACGTTTTTGTTTGGATTATTTGAAATCTTTATTTTGTTTTTTATCATCTTCAAAAACCATAGTCCATGTTTTTATTGATTTTAATAAATATTGAATAGCTCAGGCTTGCTTGGACCATGGTTTCTTCTGCATCACAAATCATGGAATTGATAATGAGATCCAGCATATCTTTCACGAAAGCAAGAAAATTTTATTCTTTGCCTTTAGATGAGAAGCTGAAATTCCAGATTAATGACGGGCATTGTGGTTATACCCCTCCTACGCTGAAATATTGGATCCATCCTCCAAATTCAAAGTTTAATTTAATAAATATTATTTACTTGAATTTTAGCTTTTGCTAGTATTCTGTCAATTATTATGCGTACTACTATAGTGAGGAGATCCATTAGGCGGTGTAGAGCTTGAATTGAACTTTATGGCATAGGCAAGGCCGTAAGGGGTTGTTTGGCTGGATGCTACCTGCAAAGTTGTTAAAATACCATGTTGTTTAGATAACATTTAATTGAGATGACCCAGCTATTTGGTGAGTGTTTGATTTAGTGTTTTTTTGTATGTTATGTATTTTATTAGGAACCAAGCTGGTTGGATGAATTGGAGGAGCGCTTCTAGAGTGTTTTGCAATCCAAAAATCTCACTCAAAATTAAAGAAAAATTTTATAAAACAGCTTACAACCTGTATTATATGAGGCTGATTGTTGGCAACAAAGAATAAACTTTTTGATAAAATAAGTGTTATAGAGATGAGGATTCTTATGTGGATGAGTGGGTATACTCATACTGTTGGAGTGGCTCTAATAGTGGATAAGATTAGAGAATGTCATATTAAATGGTTCGGGCATATTAAGTGTAGGCCGTGCAACACTCATGTTAGAAAATTTAAGTTTATAATTTCCCAAAAGAGAGAGGAAGGATAAAAAATATATGGAAAGAAACTATTATGAAGGACCTTCTCTATTTGGAACTAAGGGGGGGGCTTCTATTTGATCATGCACAATGAAAACGAATGATTCATATAGCTTGCCACCTAGTGAGATGAAGGCTTGGTGCTTTTGTTGTTATAATATATTAAAGTAATATCACCTAATTATAATATCTATATTTTTCATTCAAAACAGTAACTTTACATGTTCAAAAAAAAAAAAGACATCTACAGGAAATGATGAATAGAACTAGATCAGGGTCGAAGGGGCAAAACATCGCCGAGACAGGTCAAGAATCCCATTCTCACCAAAATTGCAAGCCATGGGAGATATAATAGTACCATATAGCTTGCTATCTCCAAATTGTGGTATATTTGGCGTGCTATCTAGATTGTATAAGATTGTAGTATTTTATTGATAAAAGGATATTAAAGATAACATAGCAAGTGTTTGGTTCTATATTATCTTTGTGCTACTAACAAATAATATGACATTACACTTGTATGGCAGGCAACCAAACAGCCCTTCTGATAAAGAGAATGAGAGAAAGAGAGAGGGAATCCTTGCCTTTCTTATGGAACCAAGAGCTTCTATGCTCACTGTTTATCAAGCATTAAGGTAACATAAGAAGCTTTCTAGCTTCTCCAAAGGTTTTTTCACCATTCAAAGGCAATGCCCTATCTAGCACACAAGAAGTGCGTGTATTGTGTAGTTAAAATTTAAACATAAAATCGAGCTTATAAGGATGAATGTGTGATGTACAATGTTACAAGTCTCATTAAATAAAAAATGTCAATATAAATTTATTTTATAAAGCAATGTGGCATATGAATATACAAATGTTTATGTGGCTTGACCATCTTATCGCCTACTACATCTACTACATTGTTCAATGCATACCTTAATGATTTCTAAGGTCGATTAAAGATCTAAGATCAATTTTTTTTTTTTTGTGCTTTTCACCAATATATATTATTTCATTATTGTCTTGTGTAGTATATGACAAGAAAGAAGGATCTTGTAACTTGATATTTGTTGACCTTGCAATTGAGCTTTAGAAGATATGTATTGGGTGAGAGATTGAATGAAAAAGTTTTTCTTGCTCTGCTTTTAATGTTGAAATGTAAGCACAGTGAACTTGAAAGCTTAGGATTTAGCTTTAACGAGAATAATGGTTGATTGTAACATATAGTCATTTAATCTTCACACAACTCATTTTACATCTATTAATTTTTGTTCAACAACTACCTTAGCATATCTAAAAAAGTTTCATTAGTATGATTAACTGTTGTAGTGGGATTAAAACTTTTGAACTAAAAATGGTGAGTCTGATTTATATTGCAAAGTTTGGCACAATCAAATTTAAAGAGCCACGGTTATTGTATGTACCACTAAACTGCTTATTTTAAATTTTTAATTTTTAATGTTTGGAAATGCCTCACTGACACAAGCTCTAGTACTAGATGTTGAACAATTCTAGAGCAGCACTTTGCAAGGATCTACCCTACGCTTTCAAATGAATGCTTGCGGAAGACAAATAGAACACAACTCGTGTCCATGATAGCTGGAGAGATCATCGTTAGAGAGATTGTTGACAGGAAACGAACATTTGCATAACCAAGGAAAAACATGCACATATTCAAGATATTAACATAGTTAAGGTGATGCCTTCATTTACACACATGTACTGACAAGATCATTTTTTTTTCTTCTCAAGGGAAGTGAACTACTAGGAATAGCACTTTTGTGATGGGAAAAGATACTTGTAAGTTTGTTTTATAATTTGTGGCCCAAACAATGTGTACACAAACTCATGATGTTATCCAAATCAAGTTTCTTACAAATGAACTCAAATCTATTTAATGATGTCAACCAAACTTTTTGTCATACAAGAGCAATACAATCTGCGTGCATTTGCACTTGCACGTTAAGTTCAGTTTCATTTCTCTAAATTAAAGTGTCAGCTTTTCTGTACTTGATCGGTTTTCTTTCATCATGAATAAAAAATGCTAGAACATGATGGTTTTGGTGGTAGAACTATCTGTAAAAGCAAG

Network for GWHGAAEX018665

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX018665
AQYNPVEYKSVYSSILTQHPRFKNFNADICTYIYIKNYISGPTPGPTRLTGIVADAAIFLRASVGRKFGSSCGGLGLNCFFLINSQGLESIILVKSLNKFFISLLIRADLLIRRFCLDYLKSLFCFLSSSKTIVHVFIDFNKYIAQACLDHGFFCITNHGIDNEIQHIFHESKKILFFAFREAEIPDRALWLYPSYAEILDPSSKFKVFNKYYLLEFLLLVFCQLLCVLLGDPLGGVELELNFMAARPGVVWLDATCKVVKIPCCLDNILRPSYLVSVFSVFLYVMYFIRNQAGWMNWRSASRVFCNPKISLKIKEKFYKTAYNLYYMRLIVGNKETFNKCYRDEDSYVDEWVYSYCWSGSNSGDRMSYMVRAYVAVQHSCKIVYNFPKERGRIKNIWKETIMKDLLYLELRGGLLFDHAQKRMIHIACHLVRRLGAFVVIIYSNITLYLYFSFKTVTLHVQKKKRHLQEMMNRTRSGSKGQNIAETGQESHSHQNCKPWEIYHIACYLQIVVYLACYLDCIRLYFIDKRILKITQVFGSILSLCYQIIHYTCMAGNQTALLIKRMRERERESLPFLWNQELLCSLFIKHGNIRSFLASPKVFSPFKGNALSSTQEVRVLCSNLNIKSSLGMCDVQCYKSHIKNVNINLFYKAMWHMNIQMFMWLDHLIAYYIYYIVQCIPFLRSIKDLRSIFFFLCFSPIYIISLLSCVVYDKKEGSCNLIFVDLAIELKICIGEIEKSFSCSAFNVEMAQTKLRILREWLIVTYSHLIFTQLILHLLIFVQQLPHIKSFISMINCCSGIKTFELKMVSLIYIAKFGTIKFKEPRLLYVPLNCLFIFNFCLEMPHHKLYMLNNSRAALCKDLPYAFKMLAEDKNTTRVHDSWRDHRRDCQETNICITKEKHAHIQDINIVKVMPSFTHMYQDHFFFFSREVNYEHFCDGKRYLVCFIICGPNNVYTNSCYPNQVSYKTQIYLMMSTKLFVIQEQYNLRAFALARVQFHFSKLKCQLFCTSVFFHHEKMLEHDGFGGRTICKSK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.200
SRP064423	SRR2545915	Juvenile tuber	0.450
SRP108465	SRR5643513	five period of Gastrodia elata	0.680
	SRR5643514	five period of Gastrodia elata	1.030
	SRR5643515	five period of Gastrodia elata	1.310
	SRR5643524	five period of Gastrodia elata	1.150
	SRR5643525	five period of Gastrodia elata	2.640
	SRR5643528	five period of Gastrodia elata	2.930
	SRR5643658	five period of Gastrodia elata	3.390
	SRR5643659	five period of Gastrodia elata	0.780
	SRR5643660	five period of Gastrodia elata	0.680
	SRR5643661	five period of Gastrodia elata	0.590
	SRR5643662	five period of Gastrodia elata	0.560
	SRR5643663	five period of Gastrodia elata	0.750
	SRR5643664	five period of Gastrodia elata	0.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.460
SRP279888	Gastro	Gastrodia elata tuber	0.95
	Juven	Juvenile tuber	1.67
	Mother_Gastro	Mother tuber of Gastrodia elata	0.36
	Mother_Juven	Mother tuber of Juvenile	5.11