Detail information of GWHGAAEX018670/evm.TU.scaffold_97.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|90022780|ref|YP_528607.1|3.00E-328-amino-7-oxononanoate synthase [Saccharophagus degradans 2-40]
KOGKOG13593.00E-81Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase
nrgi|723705302|ref|XP_010322011.1|1.61E-103PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform X2 [Solanum lycopersicum]
Swissprottr|Q8RYL1|LCB2B_ORYSJ3.00E-09Long chain base biosynthesis protein 2b
trEMBLtr|M0TFD6|M0TFD6_MUSAM1.00E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P06960_001}
trEMBLtr|M0TFD6|M0TFD6_MUSAM1.00E-50Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P06960_001}
TAIRAT5G046203.00E-81biotin F

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010214164771435291-
Transcript Sequence

Network for GWHGAAEX018670

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.20Aminotran_1_21473161.30E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00652bioF Metabolic pathways map01100
Biotin metabolismmap00780

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0016740Molecular Functiontransferase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.360
SRR2545915Juvenile tuber5.270
SRP108465SRR5643513five period of Gastrodia elata4.310
SRR5643514five period of Gastrodia elata6.780
SRR5643515five period of Gastrodia elata5.570
SRR5643524five period of Gastrodia elata6.120
SRR5643525five period of Gastrodia elata8.130
SRR5643528five period of Gastrodia elata4.740
SRR5643658five period of Gastrodia elata5.910
SRR5643659five period of Gastrodia elata8.090
SRR5643660five period of Gastrodia elata10.360
SRR5643661five period of Gastrodia elata9.260
SRR5643662five period of Gastrodia elata7.330
SRR5643663five period of Gastrodia elata7.360
SRR5643664five period of Gastrodia elata5.680
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.520
SRR6049655Rhizomagastrodiae_C368-T10_good_13.020
SRR6049656Rhizomagastrodiae_C368-T07_good_14.580
SRR6049657Rhizomagastrodiae_C368-T07_good_12.320
SRR6049658Rhizomagastrodiae_C368-T04_good_11.790
SRR6049659Rhizomagastrodiae_C368-T04_good_12.880
SRR6049660Rhizomagastrodiae_C368-T01_good_11.890
SRR6049661Rhizomagastrodiae_C368-T04_good_12.270
SRR6049662Rhizomagastrodiae_C368-T01_good_13.440
SRR6049663Rhizomagastrodiae_C368-T01_good_12.660
SRR6049664Rhizomagastrodiae_C368-T10_good_15.460
SRR6049665Rhizomagastrodiae_C368-T10_good_15.460
SRP279888GastroGastrodia elata tuber 6.14
JuvenJuvenile tuber3.83
Mother_GastroMother tuber of Gastrodia elata 3.23
Mother_JuvenMother tuber of Juvenile 5.35