Gene detail

Detail information of GWHGAAEX018672/evm.TU.scaffold_97.54

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743778368\|ref\|XP_010919643.1\|	0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105043683 [Elaeis guineensis]
trEMBL	tr\|M0RSR0\|M0RSR0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P16300_001}
TAIR	AT5G47400	6.00E-172	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	1464037	1469640	+

Transcript Sequence
>GWHTAAEX018672 CAGCAAGCCCTTCCACTTGAAACGTAAGCTAGAAATATAATGAAATGCGAATGAGAGATGAACCATCAGATGTTATCATGATTCGTGCAAGAGAACCATTTATTTTCTTACGCGAATCTCGAAGCCAATCTAGGGTTTTTGAGGATTCTATTTCGCATCCATAAGCGGAACGGACGAGAAGAGCTGTTTGATCGTCCCGGCTTCAGCCCCGTTTAAACCTTTCAAATCCCCTTCTCCTCCCTTCCTCTCGCTTATAGTTCGCCCTAGAAGGCAAAGAGGTCGCAGGCGCCGCCTCATCCTCTTCCCCCCTTCCATTGCGCAGCCAAATTCAATCCTGAATCGCAGATGATGCCCTGCCTCTTCTCGATGGACGCTCATGCCCGAGCTCAGGAGCTGGCATCTTCCGTGCTTTCGTCCTCATCCCCTCCTGCCATCGCCTCCGCGATCTCCTCCGCCGATTCCATCCTCCGTAAGATCTCCGCCGATCAGTCCCGCGCCTTCTTTTCCTTCGCCTTCCCCGCCATCATCTGCCGTCTCTTTGGCTTCGACGACTCGCCCTCAACTCCGACGCGTTCTGCCTCCACTGCATGGATCGATCAGGCCCATCGCGATCCTGACCTAGCCTTCCGCCTCTTCAATTTTCTTTCCCCGCAGGGCCCTCTTTTCTCCGCAATTTCTTCTGCGGATCGCCACGGCCTCGTCAAATACGTATTCCCAGCGGAGAGGCTTCCCGAGTGGATGAGGTATGCGCTGCAGAGCGAGCGGTATTCATCGATGCTTCCCGACCTTTGCTCCCTCTTCCATGATAGGATCAAGGAGGACCCAATTCTGGGGACTTTTCAGCTTCAGCTGAATGCCTTTGAATATTTCATGTTTTGGTTTGCGTACTATCCCGTGTGCAGGGGGGATTGCGATGATTTTGATCACAATTTTGCGCAGAAGAGCCGTCGGAGGTCGAGGCTGCAGAACTGGTCATCGTCTTTTCCTGTCTTCGTCAGTCCCAGCCGGAGATCCGATCCAAAGAATGAAGTTAGCTTATACCTCCGACTACTTTATTCCTATATGTGTGCCTTTGTGCCCAAGTGCGGTTTGGGTTCTCACCAGCCGAACCGCTGCTCGCTCCTGCATTATTCTTCGACCTGCGACGTTTCTGTGTTTGAGCAGGCGGAGTTCCTTGTAAATACTATGATTCATTTTTGGCTCGTGGACAATGATTTCATTCCCTTGCCCTTGAATGTTTGCCGGTCATTTGGGATTTCATTCCAACATCGATCAGTGTTAGCAGAGACACCCCCTACTGCAGGATTGGGTGAAATTGTGAAGTTGTTTGTAAACTACCTTAATTCATGCTTGGTTGTTGTTGCTGAAGGAAGTAATCAGAAGGTTCTCAGTTTGGTTAATACTTCGTCCTTGAGGCCCATGCTTTCTTTAGAGAGGACTGGTGGTTCATGGAACTCGGCAATGCAGAGGCCACTGTACAGGTTCCTCTTGAGGTCTTTTCTTTTCTGCCCCATTGGGACTTCTATAAAGAATGTGAGCCAGGTTTTATCTGCGTGGGTAACATATATGGTTCCCTGGAGAACTACTACAGAAGATTTTGTTGAGTTTAAGCCGCCAGAAGGGTGCAAATTGGAGAGCTCAAAAAAGGAACTGGTACAGGGGAAAAGCACAGGGGAAAATGAAAGGCGTCATTTACATGCAATCTACACCCCCCTTTGGGAGGGCTATGTTGCTTCTAATTATCTTTTTTACAACTCATTGGTTGTGCATTTTCTCGTTTTTGCACACAAGTTTCTGCATGCAAATGCCGAGGCAGTACTGGACATGGTGTCGAAGGTTTTAAGCATTTTGACATCATCGCAGGAGCTGATGGACCTTCTTCGGAAGATGGAGGATGCTTGTCATTCAAAGCAGTCCTCCGGGCTTTGCTCGGCGGATAAATACATTCCATCCATTCGCCAGCATCTGAAGGATTGGGAGGATGGTCTGTGGAGCGGAGATCTGAAGCTGTTCGGCGAGGGGGAAGACGGCGGCCTCAAGCTGCTTCAGCTGCTGGTGCTTCGAGCGGAGCACGAGATGGACGACGTCCCGCAGAGGAGACTTGATGGCATGCTGGATTCGGTGAAACTCCAAACGGGACTTCTCTTTGGAGGGGCCGCCGTGGGCACGTGCGCCGGCGGGCAGGCTCGTCCGCTGCCCGATTCGATCGGGCAAATGGGCCGAGGAGGGGTCGGGTTCTCCCCGAAGCGGCCGGGCGCGTGGGCCGATATCGAGTACAAGGGCGATCCCATGCGCCGGCCCATCTCCGACGACGAGGTGGCGTGGCTCGCCCGGCTTTTCATCAGATTTTCGGACCGGGTTAACGACTCGCTCGGCCTCGGCCGGCCGGGCGAAGGACTGAGGGTAAATCTGCGGGTCTTCTCGTCCAAGAAATTCTTGTTCCTGCTCCTTTTCCTGTACCTCTCCGCTCAGGCGCTGCGGAAGCCCTATTGCTGCTGGCTGCATTGAAGCGGGTATTGTATATATTTCTACTTTTGTATATATCACAGACAGTTTACTTACGTACACAAAAGTAATGCCATACCAATTTTGGAATTTTTTTTTTCTTTTTCTTGAATCTTGCTGAGAATTCTCATTTGAAAAAATTTTAATGTAAATAATTTGATTACAGTATAATTATTATATTTTATTGA

Network for GWHGAAEX018672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14724.5	mit_SMPDase	97	182	7.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0050290	Molecular Function	sphingomyelin phosphodiesterase D activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.330
SRP064423	SRR2545915	Juvenile tuber	9.110
SRP108465	SRR5643513	five period of Gastrodia elata	9.580
	SRR5643514	five period of Gastrodia elata	9.380
	SRR5643515	five period of Gastrodia elata	10.760
	SRR5643524	five period of Gastrodia elata	8.390
	SRR5643525	five period of Gastrodia elata	8.850
	SRR5643528	five period of Gastrodia elata	6.510
	SRR5643658	five period of Gastrodia elata	5.270
	SRR5643659	five period of Gastrodia elata	10.800
	SRR5643660	five period of Gastrodia elata	12.870
	SRR5643661	five period of Gastrodia elata	14.180
	SRR5643662	five period of Gastrodia elata	15.450
	SRR5643663	five period of Gastrodia elata	12.470
	SRR5643664	five period of Gastrodia elata	21.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.080
SRP279888	Gastro	Gastrodia elata tuber	16.91
	Juven	Juvenile tuber	16.17
	Mother_Gastro	Mother tuber of Gastrodia elata	24.77
	Mother_Juven	Mother tuber of Juvenile	29.05