Gene detail

Detail information of GWHGAAEX018673/evm.TU.scaffold_97.55

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0978	9.00E-156	E3 ubiquitin ligase involved in syntaxin degradation
nr	gi\|672167684\|ref\|XP_008803814.1\|	0	PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|A2XW69\|BRE1A_ORYSI	0	E3 ubiquitin-protein ligase BRE1-like 1
trEMBL	tr\|M0RW69\|M0RW69_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P01610_001}
TAIR	AT2G44950	9.00E-156	histone mono-ubiquitination 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	1472004	1523289	-

Transcript Sequence
>GWHTAAEX018673 GTTTGGGAGACAACTCGCTAACTCGTTTAATATTTTTCCTTGCAATGACGTTCTTACCCTCGTTCTTGATAGAACTACCGCTCCGCTCCGCATAATCCGCATAATTCTTGCATGTGCAGCGGTGATGCCCTCCCTGCTGCTCTCTGCTACAGAACTTAGAAACCCCCAGATTCAACGCTAGGAAGGTTTCATTTTTGCAGTCCTTCGACGCATCCATCCTTCCCTGATAACTTTGGTAAAAGAGAGAGCGAATTTCTAACTCATCGTAGGAGTTTGGAATACTAATTAGCCCTAGGTTTTCCGGAGCTGCTTCTCCCGTTGTTCTTTCGATGTTTGCCTTAATTGATCGATCTATTAGGCATTAGGATTGACCCGATTGCCGCATGAGCGGGGTTGCCCCTTTTCTGAGCCGATCTTCTCTCAGTGCCAGAGAAAATATCTATCTTTGGCTTTTATGTGATGTTGATTAGGTTTTAGATATTTTATTTTTAGCATGGGGAGTACCGGAGAACCTGACAGGAAGCGGCGTCACTTCAGTTCCATCTCGCCTGCGGCTGGAGCTGCGGCTAAGAAGCACTTGTTATCCCCTAGCTCTGATGATAAAAAGCTTGATGTTGCTGTTCTTCAGTATCAAAATCAGAAGCTTTTTCAGCAACTTGAAGCTCAAAAAGTTGAGTACTTTGTTCTTGATGACAAGTTCAATAAACTGAAAGAGCAACATCAGATCTATGAAGATGCTGTAGTAGTAGTTGAGAAGTCCTGGGAACAGATGGTCAACGATTTGGAGTTCCGCTCAATTTGCACTAGTGAATGTTCCAATTTTCAACATTATATGCATGATTCCTGTATGGTTGAGGGCACGGTCACTGGTTCAATTGATGGAGCGTTCTTCCCCATACAGGATGATTTCTTGAACAGACTAGTGCAAGCTGGTGCAACAGAGAGTTGCTCGTGTAATGGATCTGATGATTCAGAGGATTGCACAAAAATATCAAATGAAACAACGAAAGTCATGCTGCAAAATTTAATTATGTCTATCAATTGGATGTGGCGTGCAAGTGAGAATGTTGCTTCAGCATTTCAAGCTACGTTTTTGGGAAATGATCCAGGATTGCAACTACAGAAATCCGTTGATGGATTAAGGGTTGAATTTAGAAACCTCATAATGACAGTGAATGACTTGCATTTGAATCATAGACTCTTATCAAGTCAGGTCCAGAATAATAGAGACATGGATGCTAAATTTCGAGTAGAGCAGAAACGTTTAGCAGGTGCATTGGCTAGTACTGTCATAGAACTTGAAGATAATAACTTAAAATTGGTGGTACTCAAGGCGCAAGGAGATGGAGCAAAAGGTGCTCCAATTATTTTTCCAATTTTGGGGAATAAACTAGCTGGTGGAGATGCATTCAGAGATGCACAAAAAGAAATTCATGACATGGAGTCTTTACACAAAGAATTAAAAGAATTAATTTCAAGCCGGATGGTGGAAATCAGTGATCTACATGAAAAGAGAATAGAAATTTTAAATAAACTGGTGAATTTACAGAATGCTTTGGTGGACGTGAAGGGTGTCTCTTCTTCCAAAGTTTTTGTGATACTTAAAGAGCAACTGGACAAATCAAGAACAGATATGGATAACTGTAGAATTTCATTGGAGAAATTGCAGGTTGAAAGGGAAAACTTCATTTGGCATGAAAAGAGAGTGGCAATGAAAGGTGATCTAGCTGATGTTTCTGGAAAGATTTCTGAATTTTCAGAGTTACGGATTGCTGAATTAGAACAAGAGTTACAGAAATTTAATCAGGAACAGAACCTATTGGAGGCAAAGATTGAAGAGGCTTCTAAAGAACCTGGTAGAAAAGAAATCATTGCAGATTTTAAAGAACTTGTCTCATCCTTTCCTAAGGAAATGGGACTTATGCAAAGTGAATTGAGCAAATCAAAGGAGACTGCTTGTGATATTCATTGCCTGAGGGCTCAAGTGCAGTCCTTATCTGACATATTAGGTCGGGAGGTTAGAGAGCTGCAATCTTTGTCTGATAGATTTGCTGGACATATTTCTGAAATTGAAAGACTACATTTGATGCTTGGAGATTTAAGAGGGACAGAACAAGAGTTGAAGCTTATTCTAGAGATGTACCATCGTGAATCCACAGATTCCAGGGAAGTCTTAGACTTTCGTGACATGGAGTACAAGGCTTGGGCTCATGTTCAAGTGCTTAATTCTTCCCTTGACGAGCACAGCATGGAAACCCGAGTAAAAACTGCTATTGAGGCTGAAGCGGTGTCTCAACAAAAGCTTGCTACTGCTGAGGCTGACATTGCTGATTTAAGGCAAAAGATGGAATTTTCTTTAAGGGATGTATCAAAATCATCCGAGATTTTGAACTCCAAGCATGAGGAGGGTGAAGCCTATCTTTCCGAGATTGAGAGTATTGGACAAGCATATGAGGATATGCAAGCTCAGAATCAACACCTCTTGCAGCAAGTCACAGAGAGGGATGAATATAACATTAAGCTTGTAACAGAGGCTGTGAAAGCAAAGCAGATGCATGATGGTGTTTGTACTGAAATAAGGTCGATTGATAAAATGCTTCAAGAAGCCAATTCATTGATGAATCTTTATGATCTGAAAGCTGTACGATTTGATGAACAATTGAGAGTTAGGTCAGACCAAGTTTCAAAACTGATTGAAGAGGCGCGGCAAAATTCTGTTGCCTTGGGTATTGCACAAATGAAACTAACTGATGTTCAAAAAGAATCTCAGGCTTTTAGGCAATCCATGAATGAAATACAAGTACAGGCCATGAAAAGTCGATCAGAGGTTACAGAGCTTTTAGTTGAACTAGAGAGGGAAAGGTTCCAAAAGAAGAGAATATATGAGGGGCTAGAAACAATGACATTGAAAGCTACAGCGCTGAGGTCACAAACAGATGGCTCAGTCTTACTGGAAAAGCTTCGCCAAGAGATCAGAGAATACAAGGGAATCCTTAAATGTCGTATTTGCCATGATCATCAGAAAGAGGTTGTGATTGCAAAATGCTACCATTTATTCTGTAGCCAATGCATTCAGAAAACCATAGAGAGCCGCCACCGCAAGTGCCCCACCTGTTCCCTCAGTTTCAGCCCAAATGACGTTAAGCCCATTTACATTTGATCAAAATGATCGCTCCGGACTCAAGCGGCGGCAGCTGCATCAGCCTTCAGCAGTCTTCTTGAGTTGTATTTGGCTGTAGATATTTTCCTTTTTATTTATGGCCGTCATTCCTTTCCTTTCGACCGTCCGAATCATCTTCTAAAGCTGAGTTTTCGGCAGCTCCTCTTAACTGTAGCTGCGGATCTGTTAAACGTGTGCGTTAGCGACTATGGAGGGGAGAGTTTCTTAATATGTATATTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX018673

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	835	875	1.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.400
SRP064423	SRR2545915	Juvenile tuber	35.620
SRP108465	SRR5643513	five period of Gastrodia elata	26.370
	SRR5643514	five period of Gastrodia elata	24.920
	SRR5643515	five period of Gastrodia elata	24.800
	SRR5643524	five period of Gastrodia elata	21.200
	SRR5643525	five period of Gastrodia elata	26.490
	SRR5643528	five period of Gastrodia elata	24.840
	SRR5643658	five period of Gastrodia elata	24.560
	SRR5643659	five period of Gastrodia elata	22.380
	SRR5643660	five period of Gastrodia elata	25.490
	SRR5643661	five period of Gastrodia elata	23.110
	SRR5643662	five period of Gastrodia elata	24.070
	SRR5643663	five period of Gastrodia elata	23.900
	SRR5643664	five period of Gastrodia elata	26.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.230
SRP279888	Gastro	Gastrodia elata tuber	27.96
	Juven	Juvenile tuber	43.32
	Mother_Gastro	Mother tuber of Gastrodia elata	34.22
	Mother_Juven	Mother tuber of Juvenile	42.40