Detail information of GWHGAAEX018676/evm.TU.scaffold_97.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|512552186|ref|YP_008090092.1| | 4.00E-63 | DNA mismatch repair protein MutS [Chthonomonas calidirosea T49] |
| KOG | KOG0220 | 0 | Mismatch repair ATPase MSH4 (MutS family) |
| nr | gi|672144444|ref|XP_008796122.1| | 0 | PREDICTED: DNA mismatch repair protein MSH4 [Phoenix dactylifera] |
| Swissprot | tr|F4JP48|MSH4_ARATH | 0 | DNA mismatch repair protein MSH4 |
| trEMBL | tr|A0A061G376|A0A061G376_THECC | 0 | MUTS-like protein 4 {ECO:0000313|EMBL:EOY24295.1} |
| TAIR | AT4G17380 | 0 | MUTS-like protein 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 1642141 | 1704363 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018676
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05190.17 | MutS_IV | 349 | 438 | 2.40E-10 |
| PF00488.20 | MutS_V | 536 | 721 | 3.00E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030983 | Molecular Function | mismatched DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.910 |
| SRR2545915 | Juvenile tuber | 3.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.420 |
| SRR5643514 | five period of Gastrodia elata | 8.030 | |
| SRR5643515 | five period of Gastrodia elata | 6.230 | |
| SRR5643524 | five period of Gastrodia elata | 6.940 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.500 | |
| SRR5643658 | five period of Gastrodia elata | 0.400 | |
| SRR5643659 | five period of Gastrodia elata | 0.980 | |
| SRR5643660 | five period of Gastrodia elata | 1.040 | |
| SRR5643661 | five period of Gastrodia elata | 1.090 | |
| SRR5643662 | five period of Gastrodia elata | 0.980 | |
| SRR5643663 | five period of Gastrodia elata | 0.460 | |
| SRR5643664 | five period of Gastrodia elata | 0.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.40 |
| Juven | Juvenile tuber | 2.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.35 | |
| Mother_Juven | Mother tuber of Juvenile | 3.37 |