Detail information of GWHGAAEX018684/evm.TU.scaffold_97.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336117644|ref|YP_004572412.1| | 2.00E-30 | oxidoreductase [Microlunatus phosphovorus NM-1] |
| KOG | KOG0143 | 6.00E-87 | Iron/ascorbate family oxidoreductases |
| nr | gi|672144411|ref|XP_008796105.1| | 1.23E-114 | PREDICTED: S-norcoclaurine synthase 1-like [Phoenix dactylifera] |
| Swissprot | tr|A2A1A0|NCS1_COPJA | 4.00E-96 | S-norcoclaurine synthase 1 |
| trEMBL | tr|M0RPC9|M0RPC9_MUSAM | 6.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P04490_001} |
| TAIR | AT1G78550 | 6.00E-87 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 1958035 | 1960118 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018684
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 56 | 156 | 2.00E-22 |
| PF03171.19 | 2OG-FeII_Oxy | 210 | 305 | 7.40E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.010 |
| SRR2545915 | Juvenile tuber | 14.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.390 |
| SRR5643514 | five period of Gastrodia elata | 74.520 | |
| SRR5643515 | five period of Gastrodia elata | 46.930 | |
| SRR5643524 | five period of Gastrodia elata | 70.660 | |
| SRR5643525 | five period of Gastrodia elata | 21.040 | |
| SRR5643528 | five period of Gastrodia elata | 22.820 | |
| SRR5643658 | five period of Gastrodia elata | 18.600 | |
| SRR5643659 | five period of Gastrodia elata | 9.710 | |
| SRR5643660 | five period of Gastrodia elata | 15.620 | |
| SRR5643661 | five period of Gastrodia elata | 11.210 | |
| SRR5643662 | five period of Gastrodia elata | 11.020 | |
| SRR5643663 | five period of Gastrodia elata | 13.130 | |
| SRR5643664 | five period of Gastrodia elata | 13.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.46 |
| Juven | Juvenile tuber | 11.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.61 | |
| Mother_Juven | Mother tuber of Juvenile | 19.43 |