Detail information of GWHGAAEX018685/evm.TU.scaffold_97.71


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|476001843|gb|AGI62063.1|1.63E-131SQUAMOSA promoter-binding-like 15 [Erycina pusilla]
Swissprottr|Q8GXL3|SPL8_ARATH7.00E-49Squamosa promoter-binding-like protein 8
trEMBLtr|M9QZ80|M9QZ80_9ASPA6.00E-132SQUAMOSA promoter-binding-like 15 {ECO:0000313|EMBL:AGI62063.1}
TAIRAT1G273705.00E-34squamosa promoter binding protein-like 10

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010219773441979005+
Transcript Sequence

Network for GWHGAAEX018685

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.13SBP1231965.00E-30
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.130
SRR2545915Juvenile tuber4.390
SRP108465SRR5643513five period of Gastrodia elata1.270
SRR5643514five period of Gastrodia elata4.370
SRR5643515five period of Gastrodia elata2.880
SRR5643524five period of Gastrodia elata5.940
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata0.060
SRR5643660five period of Gastrodia elata0.130
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.050
SRR5643664five period of Gastrodia elata0.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.520
SRR6049655Rhizomagastrodiae_C368-T10_good_13.750
SRR6049656Rhizomagastrodiae_C368-T07_good_13.970
SRR6049657Rhizomagastrodiae_C368-T07_good_14.790
SRR6049658Rhizomagastrodiae_C368-T04_good_11.010
SRR6049659Rhizomagastrodiae_C368-T04_good_10.840
SRR6049660Rhizomagastrodiae_C368-T01_good_12.130
SRR6049661Rhizomagastrodiae_C368-T04_good_13.970
SRR6049662Rhizomagastrodiae_C368-T01_good_13.260
SRR6049663Rhizomagastrodiae_C368-T01_good_11.090
SRR6049664Rhizomagastrodiae_C368-T10_good_13.070
SRR6049665Rhizomagastrodiae_C368-T10_good_13.070
SRP279888GastroGastrodia elata tuber 0.00
JuvenJuvenile tuber0.26
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.00