Gene detail

Detail information of GWHGAAEX018686/evm.TU.scaffold_97.72

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743778269\|ref\|XP_010919590.1\|	2.72E-59	PREDICTED: squamosa promoter-binding-like protein 7 [Elaeis guineensis]
Swissprot	tr\|Q7XT42\|SPL7_ORYSJ	2.00E-47	Squamosa promoter-binding-like protein 7
trEMBL	tr\|A0A088DLF7\|A0A088DLF7_GOSHI	2.00E-55	SQUAMOSA promoter binding-like transcription factor {ECO:0000313\|EMBL:AIL95855.1}
TAIR	AT2G33810	2.00E-35	squamosa promoter binding protein-like 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	1983494	2020743	-

Transcript Sequence
>GWHTAAEX018686 ATGTTTGTTTTGGGGACCTGGTCTTTCTACTTTTGTGTTGCTGGATCTGTTGGTTTGCCTGTGGTGCCTGCTGGTATGCCTGCTAAAGCTGCTAGCGTGCTACGGTGCCTGCTGGGTCGTCTGCTGGCCTGGGGGTATGCCGACTGGTCAGCCTGTCATTTTTCTGGGGTTGCTATTTCTATGGCTGGTTTTCCTGGCGTTTCGGCGGGTTTGGCTGTGCTAGCTGGGGTATCTATCCCGATTGTTGTGTCTGCTTTTTGTTCTTCTGAGTTTGGTATTGTTTTGTTGGGGATGGAGTCCCTGGTGCTTTGCAGTTTGGCTGATTTGGGTGGTGGTTATTTGGTTGTTCTGGTTGTTGGGCTTTTCACTGGATTTTCTGTTGGATTTGCTGCTTCCTTTGATGCTTTTGATATCTCGGTCATCACTTTATTTATGCGTTATTCGCTTATCATTTTTTTCACTGCTGGCATCCCTTTATTGGAGGAAAATGAGGTCACTTTTGCTGATGTCTCAGCCTCAATTTTAATTGATGTTGCTAATTGTTTTTTTTCTCCCCAGGCATGGTTTGGAAACGGCAAGAGAGAGAGAAAGAGGGTGATGGCTTACCCCAGTGAGCTCGGGGCTGAGCTGGCCGAGCTTCCCAGTACTCTGATGAAGATCCTCGATGACCATGTGGGGAGGAGCCGAGCTCTGGCAGCCCGTCCTGGCTCCATAGAGCGACTCTCTGGCAGCACCCTATCTTCCGAGGGGGCCCCGCTCCCCATCACTAGCCCAATCCTATCCCGCCACGTGAATCCCCATCGCCCGGGTCTCGACTGCTCCCCGTTCTTTACCATTCCCCCGCCTCTCATTTCCCTCTTTAAATACCGTTCACCCGTAGAATCCACCACCACTTTCCTCGCCGTCTCCGTCCTTCCCGGCCTCGATTTTCTCCTTTCAATGGAGGGCGGAAGATCTCCAGTGAGGCTTGCTGACGGCATCTCTGGCTTCATATCTTGGGGCGGTTTCTGGGATCCCTTGTTAGACGGAGGCATCGCGCTCGCGCCATCGTCGTCATCATCATCGTCACCTTATTCCTACCGGAGACCCTCCGGAAAACGTCAGTGCTGCTTACGAGGGGTATCGGCGGCGATCGAAGAGTCTCCGGCGGCGAAGCGGGCTTCATCGGCGGCGGTTAAGCTTTGGGCTCCGAGATGCCAGGTGGAGGGTTGCGATAAAGCTCTCGGAGACGCTAAGGATTATCACAAGAGGCATAAGGTCTGCGAGATGCACTCCAAGGCCCCCTGCGTTGTTGTTCTCGGCACGGAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCACCTTGTGTCGGAGTTCGATGACGCAAAGAGGAGTTGCCGGCGGAGGCTTGCGGGGCATAATGAGCGGCGGAGGAAGGGCAGCAGCGGCAGCTCTTTTCTAGAAAGCACGGTGATGAGCAGCACTTTCCCCTTCATTATATCTCCGGCAAGAACCTCCGGCCGTGCTCTCTCTCTTCTGTCATCCAAAACCGCCCCATGGCTGTCAGAGTCCGAGCTGTCCTCTCGCTCGAGCGCCGCCCTCCGCAAGCTGGTCTTTGAGAACCGCACCGCCGCCTCTCTCACTTCTTTCGCGAGCCCCGTGCCAGCATCAGCGCCGCCTCACATCAACTGCTACGACCCTTACAGTCAAATTTCAGGTTGGGCGGCCAATGCGCCCCTTCTGCAGCCGTCTGCAGGCCACCATCCAACGACGCTGGATCTCATTCGGGTGATGCCCAATCCTTCTGCTGAATTCATGCCAGGAAGTAATATCAGCAGGAACGGGGATCGTCTTTCCCAAGGCGATTTCGGCGACTTCTGGAGATCCTTTCCCACCCACCTTCTCTGACCACCCCTGGTATTTTTATTTTGTTTTTTGATATGCATAGAACTGTCAATATATGTGCAGAGCAGAGTTTGATTCTTCCAAGTATCGATGATTTTGTTTGTCAAGTGTAAGGTTTATGTGTGTAAGTAAATAAGGAAATGTTTTGGTTTTGTACAGTGTAATGCAATTTCGGTCTTTTAGTTGTGATATTAGAGGCAGTGGAAAACAATATAAAATACTGATGACAAGTTATAGTGGCATTTTTGCTTGCAATTTTGGTGTCAGCTCTCAATCGTTTATTGTGCAAACTTTTATGTTTTATTAGTATTATATTGTCAGTGAATATGTGTCCGTTTCT

Network for GWHGAAEX018686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.13	SBP	399	472	9.20E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.140
SRP064423	SRR2545915	Juvenile tuber	1.690
SRP108465	SRR5643513	five period of Gastrodia elata	1.080
	SRR5643514	five period of Gastrodia elata	11.840
	SRR5643515	five period of Gastrodia elata	3.070
	SRR5643524	five period of Gastrodia elata	8.980
	SRR5643525	five period of Gastrodia elata	5.690
	SRR5643528	five period of Gastrodia elata	4.090
	SRR5643658	five period of Gastrodia elata	11.520
	SRR5643659	five period of Gastrodia elata	1.980
	SRR5643660	five period of Gastrodia elata	2.370
	SRR5643661	five period of Gastrodia elata	1.210
	SRR5643662	five period of Gastrodia elata	0.750
	SRR5643663	five period of Gastrodia elata	0.550
	SRR5643664	five period of Gastrodia elata	0.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.000
SRP279888	Gastro	Gastrodia elata tuber	2.65
	Juven	Juvenile tuber	2.58
	Mother_Gastro	Mother tuber of Gastrodia elata	2.37
	Mother_Juven	Mother tuber of Juvenile	1.89