Detail information of GWHGAAEX018687/evm.TU.scaffold_97.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 9.00E-60 | GATA-4/5/6 transcription factors |
| nr | gi|672144399|ref|XP_008796101.1| | 3.06E-79 | PREDICTED: GATA transcription factor 4-like [Phoenix dactylifera] |
| Swissprot | tr|O49741|GATA2_ARATH | 3.00E-60 | GATA transcription factor 2 |
| trEMBL | tr|A0A067K962|A0A067K962_JATCU | 2.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:KDP28810.1} |
| TAIR | AT2G45050 | 9.00E-60 | GATA transcription factor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000102 | 2077130 | 2079787 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018687
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 204 | 237 | 1.90E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.200 |
| SRR2545915 | Juvenile tuber | 2.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.200 |
| SRR5643514 | five period of Gastrodia elata | 5.920 | |
| SRR5643515 | five period of Gastrodia elata | 4.790 | |
| SRR5643524 | five period of Gastrodia elata | 4.990 | |
| SRR5643525 | five period of Gastrodia elata | 0.160 | |
| SRR5643528 | five period of Gastrodia elata | 0.240 | |
| SRR5643658 | five period of Gastrodia elata | 0.530 | |
| SRR5643659 | five period of Gastrodia elata | 4.840 | |
| SRR5643660 | five period of Gastrodia elata | 3.390 | |
| SRR5643661 | five period of Gastrodia elata | 3.540 | |
| SRR5643662 | five period of Gastrodia elata | 1.360 | |
| SRR5643663 | five period of Gastrodia elata | 3.020 | |
| SRR5643664 | five period of Gastrodia elata | 1.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.46 |
| Juven | Juvenile tuber | 0.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.10 | |
| Mother_Juven | Mother tuber of Juvenile | 0.10 |