Detail information of GWHGAAEX018688/evm.TU.scaffold_97.77


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18310Negative regulator of transcription
nrgi|743778256|ref|XP_010919584.1|0PREDICTED: CCR4-NOT transcription complex subunit 1-like [Elaeis guineensis]
trEMBLtr|M0RPC5|M0RPC5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P04450_001}
TAIRAT1G020800transcription regulators

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010221815412248249+
Transcript Sequence

Network for GWHGAAEX018688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16418.4CNOT1_HEAT4766216.50E-32
PF16417.4CNOT1_TTP_bind6478142.70E-64
PF16415.4CNOT1_CAF1_bind98712072.90E-93
PF12842.6DUF3819133214727.50E-48
PF04054.14Not1204524158.30E-153
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12604CNOT1, NOT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms64.680
SRR2545915Juvenile tuber48.870
SRP108465SRR5643513five period of Gastrodia elata22.930
SRR5643514five period of Gastrodia elata31.170
SRR5643515five period of Gastrodia elata26.350
SRR5643524five period of Gastrodia elata29.790
SRR5643525five period of Gastrodia elata23.490
SRR5643528five period of Gastrodia elata18.300
SRR5643658five period of Gastrodia elata24.800
SRR5643659five period of Gastrodia elata26.180
SRR5643660five period of Gastrodia elata29.990
SRR5643661five period of Gastrodia elata25.210
SRR5643662five period of Gastrodia elata23.200
SRR5643663five period of Gastrodia elata26.930
SRR5643664five period of Gastrodia elata28.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.010
SRR6049655Rhizomagastrodiae_C368-T10_good_128.550
SRR6049656Rhizomagastrodiae_C368-T07_good_133.680
SRR6049657Rhizomagastrodiae_C368-T07_good_129.910
SRR6049658Rhizomagastrodiae_C368-T04_good_137.750
SRR6049659Rhizomagastrodiae_C368-T04_good_138.750
SRR6049660Rhizomagastrodiae_C368-T01_good_133.190
SRR6049661Rhizomagastrodiae_C368-T04_good_140.950
SRR6049662Rhizomagastrodiae_C368-T01_good_129.450
SRR6049663Rhizomagastrodiae_C368-T01_good_133.250
SRR6049664Rhizomagastrodiae_C368-T10_good_126.510
SRR6049665Rhizomagastrodiae_C368-T10_good_126.510
SRP279888GastroGastrodia elata tuber 42.75
JuvenJuvenile tuber43.43
Mother_GastroMother tuber of Gastrodia elata 28.96
Mother_JuvenMother tuber of Juvenile 48.12