Gene detail

Detail information of GWHGAAEX018696/evm.TU.scaffold_97.90

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1951	GTP-binding protein AARP2 involved in 40S ribosome biogenesis
nr	gi\|672144375\|ref\|XP_008796087.1\|	PREDICTED: ribosome biogenesis protein BMS1 homolog [Phoenix dactylifera]
trEMBL	tr\|M0TPG4\|M0TPG4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P11110_001}
TAIR	AT1G06720	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	2561750	2601927	+

Transcript Sequence
>GWHTAAEX018696 GATCGGGAGCAGAATCGAGCGGAAGAGGAAGGTCGAACGCATAAAGGAGAGCAGAGGTCGCACGCTGCAAGTCTCCGATTCCGTCTCTCTCGGCGTAAGGGACTTACGAGCGGAAGGAGGGATCGAGTTTCCTTGCTCGGTCGGCCGCCAGAAATTTTCTTGCCTTCTGAATCAAATTTGCAATAAATGGGGACTACTACTGGTGATCAGCTTCATAAAACGCACAGGGCACCACAATCAGGAGCTTCTGCAAAGAAAAAGTCCAAGAAGAAGCAACAAACTTCTAGTGATGGAAAGCAGCATAATCCTAAGGCATTTGCTTTTAGTTCATCCGTTAAAGCCAAACGATTGCAATCTCGTGCAGCAGAAAAAGAACAACGCAGGCTCCATGTTCCTACCATTGATCATTCAACTGGGGAACCTGCTCCGTATGTTATTGTAGTTCATGGTCCTCCCAAGGTTGGGAAATCCCTCTTGATTAAATGTCTTGTGAAGCACTTTACCAAACAAAATTTACCAGAGGTTCGAGGTCCAATAACTGTTGTATCAGGAAAGCAAAGGAGGGTTCAATTTGTGGAATGTCCAAACGATATTAATGGCATGATTGATGCAGCAAAGTTTGCTGATCTTGTATTGTTACTGATTGACGGCAGTTATGGATTTGAAATGGAAACTTTCGAGTTTCTTAACATTCTACAAGTTCACGGATTTCCTAAAGTTATGGGTGTGCTTACACATCTTGATAAATTTGAGGATGTCAAGAAGTTGAGAAAAACTAAGCAGCGTCTTAAGCATCGCTTCTGGACTGAGATAAAAGAAGGTGCAAAGTTGTTCTATTTATCTGGTCTCATTCATGAGAAATATCCTAAACGTGAAATTCACAACCTGGCTAGATTTATTTCTGTTATGAAACATCATCCTTTGTCATGGAGAACCGTACATCCTTACTTACTTGTCGATCGTTTTGAAGAAGTAACACCTCCTGAGCGAGTGCATTTAAATAAAAAATGTGATAGAAATGTCATTTTGTATGGTTACCTTCGGGGCTGCAATATGAAGAAAGCTACCAAGGTGCACATTGCTGGTGTTGGTGACTTTAGCTTAGCTGGCTTAACTAGCCTGGCCGATCCCTGCCCTTTGCCATCTGCAGCCAAAAAGAAAGGACTCCGTGACAAAGAAAAACTTTTTTACGCTCCCATGTCTGGTGTTGGAGACCTGCTGTATGACAAAGATGCCGTGTACATTGACATAAATGATCATTTTGTTCAGTATTCAAAAATTGATTGTGAAAATGGTTCAAGTGTAAGGAATGGTAAAGGCCCTGACATAGGTGAAGCTTTGGTGAAAACCCTTCAGACTACGAGATATTCTATTGATGAGAAATTGGACAATAGCTTCATCAAACTCTTTAACGTGAAGCCGTTTCCTTTTTCACATGAAGTAAATGGTTCACACGATAAAACTACAGAGAAAGATGGATTAACCAAGAATCTACCAATGAAAGATGGTGATATGGGTGGTATTGACTACTATAACCAGGAACATTTTGATTCCATGGATGACACAAGATTTAAAGAGAATAGTAATAAAAGGGATGTGAGCAAGGAAATCGAACCAGAAGATTCCGATGAAGAAAATAGTTATGAATCAGAAGGCAACCACGATGAGGTTGATCAGGAAAATTTGCTTAATAGTATTCTTGAAGAAACTGAATTTCACAATGGAAGAATGAGGCGAAAAGCTATATCTGCTAATTTAGTAGATCAGGAGGTTTCTGAGAAAGATGATGCAGATGACCAGTTAAATCTCAGTTCAGAATCTTCTGATGGCACATACTCAGATAGAGGTAATGATTCAAAGTGGAAGGTGTCTTTGATTGACAGAGCAAGGATGAGACAAAACATTAATCTGATGCAACTTGTATATGGACATTCTTCATCTAAATCAGTAACCGCTGCAAGTGTAACAGAAGGCACTAATAGTGAAGATAGTGATGATGAAGAGTTTTTCATACCAAAAAGGGAGTGGGACAAGAGGATCGTTGAGAAACCTGATTATGATGATATTGATGCTGAGGAGTGCTCCAAACTGGCTACTTTGCAACTCAAGGACTGGTCTAGTGAAGACCTCATCAGTGCTGTCCGTGACCGTTTTGTCACTGGAGACTGGTCAAAGGCTGCTAAAAGAGGTGAAGAGGGAGATGCTGGAGGTGATGGGGAAGACTTCTATGGTGATTTTGAAGATCTGGAAACTGGTGAAGTGTTTAAAAATCAAGCTGCACATGATGTTAAAGAAGGCGAAGTGAAGACAGAAGATCTGGAAGCTGAGGAGAGAAAGCTTAAAAAGCTTGCTCTTCGTGCAAAATTTGATGCTCAATATGATGGCTCTGAGCTATCAGATGAAGAAGATGGAAAAGCGAAAGAAAAAAAAATTTCCTCACTAGGTTCCAATGGTAGTGGTTACTTTGATAAGATGAAAGAGGAGATGGAACTTCGTAAACAGATAAACATATCTGAGCTCAATGAGCTTGATGAGGTTACTCGTGTAGAGATTGAGGGCTTCAGAACTGGCACATACCTGAGGTTGGAAGTTCATAATGTTCCATTTGAATTGGTTGATCATTTTGATCCGCATCGCCCTTTATTGGTTGGAGGTATTGGACTTGGGGAAGATAATTCCGGTTACATGCAGGCTCGCCTGAAGCGTCATCGATGGCACAAAAAAGTGCTTAAAACCAGGGATCCAATAATTGTTTCAATTGGTTGGAGACGGTATCAAACGATACCTATCTATGGCATCGAGGATCAAAATGGACGGCATCGAATGTTGAAGTACACACCTGAGCATATGCACTGTATTGCAATGTTTTGGGGCCCTCTTGCACCTCCTTCAACTGGAATAGTTGCTGTGCAAAAGTTATCCAATAATCAGGCTGCTTTTCGAATTACGGGAACAGGTGTTGTTCTTGAGTTTAATCACGCTGCACGAATTATGAAGAAGATCAAGCTTGTCGGCTATCCTTGCAAAATCTTCAAAAAAACAGCTCTAGTTAAGGACATGTTTACAACAGACCTGGAAATAGCTAAGTTTGAGGGTGCTGCTGTTAGGACTGTAAGTGGTATTAGAGGACAGGTCAAGAAGGCAACAAAGGCGGAGCTGGGCAACGGGCCAAAGGCAATTGGCGGAAACACAAAAGAAGGAATTGCGAGATGCACATTCGAGGACAGGATCCTCATGAGCGACATTGTGTTCTTGCGTGCTTGGACTCAAGTGGACATCCCCTGCTTCTTCAATCCCGTAACAACATCGTTGCAGTCCAGAGATCAACCATGGAACGGCATGAAGACAGTAGCTGAGCTCCGCCGGGAGAACAACATTCCAATTCCCTATAACAACGATTCAGTCTATAAGCCCATAGAGCGAAAGCTGAGGAAGTTCAATCCCCTTGTGATCCCACAAAAATTACAAGCAGAATTACCCTTTGCTTCGAAGCCAAAGAACACACCTGCTCGGAAATGGCCCCTTCTCGAAAAGCGTAGGGCAGTTGTCATGGAGCCTCACGAGCGGAGGGTTCATGTTCTTGTCCAACACCTTCGTCTTATCAAGAATGAAAAGGTGAGGAAGCGGCGGCTGAAGGAGCGAGAGAAGAAGAAAGAGTATGAAGCGGCAAAGGCGAAAACGGAGCAGATTGTGAAGAAGCGAAGCAGAGAGGAGCGGCGGGATCGATACCGGGCCGAGGACAAACACAAAAGGAGAACTAGGAGAAAAGTTGAGGCTTGATTTTATTCTGTATTTTTGCTTAGCGCAGTGTGGTCCAGAAGGGCTCTGAAAATATTATATTTTTATTTATTTTAATTGTGAGATTATGCAAAACCTTTCTATATTTTTGTTATTTTTTATAAGATTGAGATTTCCACTCAATACCGGGCCGAGGACAAACGCATAAGTGGTTCCGATCTCTTTTCTTACAATTAGGGAAAATTCTCCAATCTCTACTCTTTTGGCTCAGGTTAGGCCACCCCTATGACCTCTTTGGTGACACCTGATCTTAATGTCTTATATTGATTGAATAATAATTCTTCA

Network for GWHGAAEX018696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08142.11	AARP2CN	230	315	9.30E-29
PF04950.11	RIBIOP_C	708	1030	2.70E-86

Protein Sequence

>GWHPAAEX018696
MGTTTGDQLHKTHRAPQSGASAKKKSKKKQQTSSDGKQHNPKAFAFSSSVKAKRLQSRAAEKEQRRLHVPTIDHSTGEPAPYVIVVHGPPKVGKSLLIKCLVKHFTKQNLPEVRGPITVVSGKQRRVQFVECPNDINGMIDAAKFADLVLLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFEDVKKLRKTKQRLKHRFWTEIKEGAKLFYLSGLIHEKYPKREIHNLARFISVMKHHPLSWRTVHPYLLVDRFEEVTPPERVHLNKKCDRNVILYGYLRGCNMKKATKVHIAGVGDFSLAGLTSLADPCPLPSAAKKKGLRDKEKLFYAPMSGVGDLLYDKDAVYIDINDHFVQYSKIDCENGSSVRNGKGPDIGEALVKTLQTTRYSIDEKLDNSFIKLFNVKPFPFSHEVNGSHDKTTEKDGLTKNLPMKDGDMGGIDYYNQEHFDSMDDTRFKENSNKRDVSKEIEPEDSDEENSYESEGNHDEVDQENLLNSILEETEFHNGRMRRKAISANLVDQEVSEKDDADDQLNLSSESSDGTYSDRGNDSKWKVSLIDRARMRQNINLMQLVYGHSSSKSVTAASVTEGTNSEDSDDEEFFIPKREWDKRIVEKPDYDDIDAEECSKLATLQLKDWSSEDLISAVRDRFVTGDWSKAAKRGEEGDAGGDGEDFYGDFEDLETGEVFKNQAAHDVKEGEVKTEDLEAEERKLKKLALRAKFDAQYDGSELSDEEDGKAKEKKISSLGSNGSGYFDKMKEEMELRKQINISELNELDEVTRVEIEGFRTGTYLRLEVHNVPFELVDHFDPHRPLLVGGIGLGEDNSGYMQARLKRHRWHKKVLKTRDPIIVSIGWRRYQTIPIYGIEDQNGRHRMLKYTPEHMHCIAMFWGPLAPPSTGIVAVQKLSNNQAAFRITGTGVVLEFNHAARIMKKIKLVGYPCKIFKKTALVKDMFTTDLEIAKFEGAAVRTVSGIRGQVKKATKAELGNGPKAIGGNTKEGIARCTFEDRILMSDIVFLRAWTQVDIPCFFNPVTTSLQSRDQPWNGMKTVAELRRENNIPIPYNNDSVYKPIERKLRKFNPLVIPQKLQAELPFASKPKNTPARKWPLLEKRRAVVMEPHERRVHVLVQHLRLIKNEKVRKRRLKEREKKKEYEAAKAKTEQIVKKRSREERRDRYRAEDKHKRRTRRKVEA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14569	BMS1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis
GO:0005525	Molecular Function	GTP binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	70.360
SRP064423	SRR2545915	Juvenile tuber	72.920
SRP108465	SRR5643513	five period of Gastrodia elata	40.480
	SRR5643514	five period of Gastrodia elata	40.720
	SRR5643515	five period of Gastrodia elata	38.130
	SRR5643524	five period of Gastrodia elata	38.470
	SRR5643525	five period of Gastrodia elata	35.530
	SRR5643528	five period of Gastrodia elata	27.860
	SRR5643658	five period of Gastrodia elata	34.340
	SRR5643659	five period of Gastrodia elata	52.710
	SRR5643660	five period of Gastrodia elata	58.790
	SRR5643661	five period of Gastrodia elata	48.640
	SRR5643662	five period of Gastrodia elata	49.110
	SRR5643663	five period of Gastrodia elata	53.940
	SRR5643664	five period of Gastrodia elata	56.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	67.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.870
SRP279888	Gastro	Gastrodia elata tuber	61.84
	Juven	Juvenile tuber	96.20
	Mother_Gastro	Mother tuber of Gastrodia elata	55.70
	Mother_Juven	Mother tuber of Juvenile	82.91