Gene detail

Detail information of GWHGAAEX018706/evm.TU.scaffold_97.103

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1737	Oxysterol-binding protein
nr	gi\|672145787\|ref\|XP_008796823.1\|	PREDICTED: oxysterol-binding protein-related protein 2A-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q940Y1\|ORP2A_ARATH	Oxysterol-binding protein-related protein 2A
trEMBL	tr\|A0A061GBF9\|A0A061GBF9_THECC	OSBP(Oxysterol binding protein)-related protein 2A isoform 4 {ECO:0000313\|EMBL:EOY24394.1}
TAIR	AT4G12460	OSBP(oxysterol binding protein)-related protein 2B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	2724878	2749416	-

Transcript Sequence
>GWHTAAEX018706 TTAGGAGTTTGATTACCGGCGGTATGAAATAGTTATAAATAAATCATATATTTATACAGAGTAGCTATAGTCCACCGTCAAACCCGGCCCCCACCCACGAACCGCAGCGCGCTCGCTCGTGAGAAACCATCGAGAGGTTACAGGAGGAGGAGAAGAATCCTTTCTCTCCCATCTTCGAAATCTTCCGCTGTTCCCCAGCAATTCCCATTATTTTATCCCCTCTCAGGGCCCCGTCCTCCATTCCCCTTCCTTCAACCTTACATCGAAGTCCGCTTCCCTTGATGGCGCTTGCGGGATGGGAATCCTAAGGGGGGCGCGATGCAGAGGAAGGAGATGCATCCGCTGTGCTGCATATCGATCGATTGCCCTGGGATCGGAGTTCGGTCGCCAGAGCCGATGGAGTGGGCACTGGTGCAGGAAGAGAGGAGCGGACAGGACGGCAATGCCGAGGGGGAAAGCGAATCGGATGTCAGCGTTGCCGGCGCTCTATATAAGTGGACCAACTTCAGCAAGGGCTGGCGATTGCGATGGTTCACAGTCAGGAATGGCGTCCTCACCTACTCGAAGATCCGGAGGCGAGAGGATCGGTTTCACGTCTCCGGACACTTCAGGCTAATCGGCGCAGCCTCAGCACGGCTTTCGCGGTCGATCGAGGAAGGGAGGAGGTTGAAGAAGCCGGTCGGCGCTGTTTCTCTCAAGATCGCATCTTTTCGAGAAAGCAAGTCTGATGATAGGCGATTTTATATTTTTTCTCCCACAACAACACTCCAATTGAAAACCAATTCAAAGGAAGATCGTGAGTCTTGGATTAAAGCTTTGGTTTCAGCACGGACTAGATTATCCTTGCCAGAAAATTTGCCTTTGTTTCAAAATGATATATCTTTTTCAACTGAAAATCTGAAAACTCGTATGCGTGATGCTGGAATTAGTGAAGGGCTCATCAAAGATTGTGAGCAGATCATGCAAGCAGAATTCTTGGAATTTCATAGGCAGTTGAAGGAGCATTACGAGGAGCATTTAGACTTTATTGGTTCATATCAGCAGCAATTGGAGGTAGTCAGTGTGGAAGATGATCCCAGAACAGTTCATGATGAATCTCTGCATTTGATGAAACATGATCTTTCTAGTTCTGGACATGGAAAATTCAGTGAGTACAGTACGACAGAATCATCTGATGATGTTGAAAAGCAAGAATTTGAGGAATTTTCTGATGAAGAACCATGTTTTTTTGATACGACGGAAAATTTCTGTGAGTCAAATGTAATAGATGCATCATCAGTTAGTGTTACAGATCATGCTGCGGAGGCTTGCAACAGTAAAGATAACTCAGTTGATAGAGTGATGATGACTGGTGTTGAAACAGACTCTAAGCTCTCTTCTAAGTTTCCACTTGTTGAGAGGCGCAAGAAGATGCCAGATCCTGTCGAAAAAGAAAAGGGTGTGAGCCTCTGGTCCATGATCAAAGATAATGTTGGTAAAGATCTTACACGAGTATGTCTTCCTGTGTACTTCAATGAACCATTATCATCGCTGCAGAAGTGTTTTGAGGATTTGGAGTACTCTCATCTTCTAGATAAAGCTTATGAATATGGAAAGAAGGGAGACAGTCTCATGAGAATTCTGAATGTAGCTGCCTTTGCAGTCTCTGGATATGCCTCTTCTGATGGCCGTCTTTGCAAACCATTCAATCCATTGTTAGGAGAAACTTATGAAGCCGATTTTCCTGAGAAAGGACTACGCTTTTTCTCAGAAAAGGTGAGCCATCACCCGATGCTTGTTGCCTGCCACTGCGAAGGGAATGGATGGAAATTCTGGGGGGACAGCAACCTCAAGAGCAAGTTTTGGGGGCAGTCCATTCAGCTGGACCCCGTAGGCGTTTTAACCCTCGAATTCGACGACGGCGAAATATTTCAGTGGAGCAAGGTGACGACAACCATCTACAATCTCATCCTGGGCAAAGTATACTGCGATCACCATGGAACAATGAACATCATCGGAAACCGGCAGTACTCTTCCAGGCTCAGATTCAAGGAGCACACGCTGCTGGACCGCAATCCCAGGCAGGTGGTCGGCTTCATCGAGGATGGTGGATCTGGAGCCAAGATCTCTACGCTGATTGGCAAATGGGATGACCACATTTACTGTGTCAGCGGGCATGACGCTTCCAAGTTGAAGGGCTCCGTTGTGCCGCCCCGCGACGCCACCCTTTTGTGGAAGAAGAACGATTCTCCCACCGACCCCACCCGCTACAACTTGACCTCCTTCGCCATCACTCTCAACGAGCTGACTCCGGGATTGCAGGAGATGCTCCCACCTACAGATTCGAGGCTGAGGCCGGACCAGCGGTTTCTGGAAAACGGAGAATATGCCAAGGCGAACGAGGAGAAGCTTCGCCTTGAGAAGAGGCAGCGAATGTCGACGAAGCTGCAGGAGGATGGATGGAAGCCGAGGTGGTTCAAGAGGGACGGGGAGAAAGGAACATTTCGCTATGTCGGGGGTTATTGGGAAGCCAGGGAGAAGGGGCGCTGGGAGGGTTGCCCCTCCATTTTTGGAGATTTTTCTTCCAATAGTTCTATTTCGCAAGCCTACTAGGCGAGATTGCTGTTGCCTTTGGGCGGTGGGAGCAAATTTCATGGGAATTTGTCGATCATCATCATCATCACCCAATGTAATCTATCTGATTAATTTTTTTATAAATTTAATTTTCTGCTTTCAAAATATATGTTGTATGCACTCGAAGAAGTATAATGGTAGCTGCTTCATTTTTTATTACAATTTTGTGCATCATGAGTTTGCCAAAGTCTCGTTAAGTTTTAGGGGCTTTTGAAAATCTTTTTGAATGGGCAAATATTGTTGCCTAGACCTTTAATAGGGATTTATTATATTAAAATGCTTTTTTAATTTAAATATATTATCAAAATTATTTTTGTATTGTACTCAATA

Network for GWHGAAEX018706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15413.5	PH_11	55	168	6.20E-12
PF01237.17	Oxysterol_BP	376	730	7.60E-119

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.560
SRP064423	SRR2545915	Juvenile tuber	26.810
SRP108465	SRR5643513	five period of Gastrodia elata	26.940
	SRR5643514	five period of Gastrodia elata	30.900
	SRR5643515	five period of Gastrodia elata	38.380
	SRR5643524	five period of Gastrodia elata	37.130
	SRR5643525	five period of Gastrodia elata	19.160
	SRR5643528	five period of Gastrodia elata	57.340
	SRR5643658	five period of Gastrodia elata	22.020
	SRR5643659	five period of Gastrodia elata	24.300
	SRR5643660	five period of Gastrodia elata	24.940
	SRR5643661	five period of Gastrodia elata	28.240
	SRR5643662	five period of Gastrodia elata	27.730
	SRR5643663	five period of Gastrodia elata	25.470
	SRR5643664	five period of Gastrodia elata	18.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.810
SRP279888	Gastro	Gastrodia elata tuber	19.61
	Juven	Juvenile tuber	39.83
	Mother_Gastro	Mother tuber of Gastrodia elata	117.09
	Mother_Juven	Mother tuber of Juvenile	214.46