Gene detail

Detail information of GWHGAAEX018738/evm.TU.scaffold_97.142

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743827999\|ref\|XP_010933740.1\|	PREDICTED: probable methyltransferase PMT17 [Elaeis guineensis]
Swissprot	tr\|Q9SZX8\|PMTH_ARATH	Probable methyltransferase PMT17
trEMBL	tr\|A0A067JMS8\|A0A067JMS8_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP25187.1}
TAIR	AT4G10440	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	3835593	3839883	+

Transcript Sequence
>GWHTAAEX018738 ATATATATATATATATTTGAAATGTTAGTACATGATTTCAAATTATAATATAAAATAAATATTAAGAAAATTTGAAGGGATTCCCCCCGCGTTTACTCGTTTACTGATCGGCTACAAATCCTCGCCGCACGAACAACCTTGAAAATAGAGATCAAAATAGAAAAAGAGAGCTTCCAGAGCGGCGAGGAAAGGAAAGCGAAACCAGAGCAGAGGTTCTTTCTCTCTCTTCCAATACCGCTAACCCCCTCAGCCATAATCTCTCCCTCTCTGAAAAAAAATGGAAGCTTTGTGCTCTCTAGTGCTTTGACGGAAGAATCAGAACAACACAGGGGAAGGCGACGTGCAGAGGAGCAAGAAGAAACGGGGGAACCGCTTTCTATAGGCTTCCTTGTGAGATGTGTAGATCAAGATGACGGTGGCTTTTTGGTTAAAAATGGTGTAATGGCAACGGACTATCCTGCTTCTCCAAAGATCCATCAGTGCAAATCAAGGAGGCAACGGCTGATTTGGATTCTAGGCGTGTGCGGCCTCTGTCTCCTCTTCTACGTCATCGGCGCTTGGCAGAACGCAACCTTGCCGAAGCAGAACCCTTCTGATGTCTCTAAAATTGGGTGCGATGAAAACCAGATCCATGATCCAATCTCATCACCATCCAATACTTATCTTGATTTCGAAGCGCACCACCAGCTTCAAATGATTGAAACCTCTCCTGTGATGGAAAAGTTCCCATCTTGTTCCATGAATTTCAGCGAATACACTCCCTGCCAGGACGCAACGAGGGGAAGGAGGTTTGCAAGGGCAATGCTGGTCTACAGGGAGCGCCATTGCCCATCCAACGACGAGCTCATTCGGTGCTTGATTCCGGCTCCCCCTTCCTATCGGACGCCTTTCAAATGGCCTCAGAGCAGGGACTACGCTTGGTACCACAACATTCCTCACAAGGAGCTGAGCATTGAAAAGGCCGTTCAGAACTGGATTCAGGTTGAAGGAGACCGGTTCCGATTTCCCGGCGGCGGCACAATGTTTCCTCGAGGTGCGGATGCTTACATTGATGATATCAACGAGCTCATTTCATTGAGTGATGGGAGCATCAGAACTGCTATTGATACGGGCTGTGGGGTTGCTAGCTGGGGGGCTTATCTTCTGAAGAGGAACATTCTGGCTATGTCGTTTGCTCCGAGGGATACACATGAAGCTCAGGTTCAGTTTGCATTGGAAAGGGGGGTTCCGGCTATGATCGGAGTCATGGCTTCGATGAGGATTCCATATCCTGCAAGATCTTTTGATATGGCTCACTGCTCTCGCTGCTTGATCCCCTGGCAAGCACTTGATGGACTGTATCTGATTGAGGTGGACAGAGTTCTGCGGCCAGGAGGATACTGGGTTCTTTCGGGTCCGCCTATTCACTGGAAGAAGTATTACAAAGGCTGGGAGAGAAGTCAGGAAGATCTGAAGCAGGAGCAGGATGCGATCGAGAATGTGGCTAAGCGTATTTGCTGGAAGAAGGTGATTGAAAAAGACGATCTTTCCGTTTGGCAGAAACCCATCAATCATAATGAATGCATCAGGTCAAGAGAAACCTATAAGACACCCCACATATGCAAGAATGACAACGCGGATGCAGCCTGGTACAAGAAAATGGAGGCGTGCATAACTCCTCTGCCTGAAGTGAGCAAGGTTGATGAGGTTGCTGGCGGCGAACTGCAGAAATGGCCAGAGCGAGCATTCGCGGTGCCCCCGAGGATAAGCAGGGGAGCTGTTCCTAGCGTTACTCCGGAGATATTTGAGAATGACAGCAAAGTGTGGATGGAGAGGGTGGGTTACTACGAGAAGCTGATCCCGACTTTAAACCAAGGGCGGTACCGGAATGTGATGGACATGAATGCCAACCTCGGAGGCTTTGCGGCGGCCATGGACAAGCACCAGGTCTGGGTTATGAATGTCGTCCCGGAGAGCTCCGGCAGGGACACCCTCGGAGTCATCTACGAGCGCGGCTTCATTGGCACATATCAGGATTGGTGCGAAGCGTTCTCCACATATCCGAGGACATATGATTTCATTCATGCTGACAATGTCTTCAGCATATACCAAGACAGGTGTGATATAACATACATTCTCCTGGAGATGGACAGGATTCTGAGGCCAGAGGGTGCGGTAATAATTAGAGACACTGTGGAAGTGTTGGTGAAGGTGCAGGCTATCACAAAGGGGATGAGGTGGAGCAGCAAGATAATGGATCATGAGAGTGGACCCTTCAATCCTGAAAAGATCCTTGTTTCTGTCAAAAGCTACTGGACTGGCGAGCAATAGCTTCGATACATGGTGATCTTCTCTAGACGATTCCCTCAAATTTTGCAAGGTGCCTTATCAAAATGTGCAGGAAAGGAATCACTCGAGTGATTGTTTTGTTACTTTCTTTTTGTTATATTCATTACACCTTCTTCCTTGTGTTTTTTTTTTGGATTGGCTTTGTTGCTTTTATGATTCTTTAGAAACCCTGCGAGTAAATGGGGTTGCTGGTGAATTGAATGCTTTGACGCTGTGCAAAAGAAATAATTTTGGTGCATACTATTTGCTTTTCCTGTTGCAACTTTAGAGGTTTTGGGTATTTTTTGTACAACTAAAAAACAAAATGGTTAGATTTTTTTGATTTAAAACATGACTCTCTTGTTTATTTTGTCAATGCAGTTGATTATTAAGCATTTTGTTGGCCAA

Network for GWHGAAEX018738

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	104	615	2.90E-229

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.950
SRP064423	SRR2545915	Juvenile tuber	7.420
SRP108465	SRR5643513	five period of Gastrodia elata	14.160
	SRR5643514	five period of Gastrodia elata	8.020
	SRR5643515	five period of Gastrodia elata	14.720
	SRR5643524	five period of Gastrodia elata	8.060
	SRR5643525	five period of Gastrodia elata	56.600
	SRR5643528	five period of Gastrodia elata	48.860
	SRR5643658	five period of Gastrodia elata	50.220
	SRR5643659	five period of Gastrodia elata	8.910
	SRR5643660	five period of Gastrodia elata	13.780
	SRR5643661	five period of Gastrodia elata	12.880
	SRR5643662	five period of Gastrodia elata	13.220
	SRR5643663	five period of Gastrodia elata	11.670
	SRR5643664	five period of Gastrodia elata	13.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.890
SRP279888	Gastro	Gastrodia elata tuber	22.69
	Juven	Juvenile tuber	22.87
	Mother_Gastro	Mother tuber of Gastrodia elata	25.99
	Mother_Juven	Mother tuber of Juvenile	12.40