Gene detail

Detail information of GWHGAAEX018747/evm.TU.scaffold_97.152

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2190	4.00E-09	PolyC-binding proteins alphaCP-1 and related KH domain proteins
nr	gi\|747066645\|ref\|XP_011080011.1\|	1.37E-08	PREDICTED: KH domain-containing protein At4g18375-like [Sesamum indicum]
trEMBL	tr\|K4CAQ6\|K4CAQ6_SOLLC	3.00E-08	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g084010.2.1}
TAIR	AT3G04610	4.00E-09	RNA-binding KH domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000102	3982310	3986975	-

Transcript Sequence
>GWHTAAEX018747 AAGAATGTTGCGTTCTCCGCTCTCTCGACGTCGTTGCAAACACCAGCGCCGATATGCATTTTTGTTCTCCTTAATCCCGCCTTTTCTTTTGCCTCTGCTGCGTCCTAAACCTTAAATCCAAGTTACCCTAATTACTTTGTACTCTTTCTTTCGGCCGGGTTCAGATCGCCCATATCTTTCATTAGATCCAGCCGCTACATCTGAATTTCCCCTCACTTCTACCTAACCTAGATCTCAACTTAAAGAATATGCCTCAGCTGGTGGAGCTTTTGGATGACAAGATCAGAACATGTTATCTGCTTCTGCTTTTTGTATTTACCATGTTACAGCCCCTACATGCACTGCAAGAATCTATTTCTTACACATTATGGATGTGCCGCGTATGCTTGGGAACAAATTAACTGAAAGTAATGTTGTTATAACAATGGAGAACTCTGGAAAAGTTGGTGAAAAGAGATGGCCAGGCTGGCCTGGCAAATTGTTTGTTCTAAGATTATTAATTCCTACTCAAAAGATGTGTATACTTGGGATAAAAGAAGGGCTTATCATGAAGGTTTGTGAGGAATCAAATGCTCGCAATGAGACTCCTGATGGCTCACTCACGTGATTCAAAACTTGCATTTTTTTTTGGTTCTGTTGCAAAAGTTTTTGTCTGTTGTTTGGTTGTTTGTTTTGTCCTATTATGATACATGACGGTGCTTGATGTTAGGGAATGGCTGAGGGGGCTAGATTTAATGTGGGTTTAAACCCAACATAACTCAAGTGATTAGATTCCAATGCCAAAATAGAAATGGTTGACCCCTCATTGTTAAATCTTGATTAACAACATCATTTTTTGCTTTGCTAAATTGGACTATATTCATAGGTATGATGTCTATTCATTATTCAAACAGCATTTTAAATGATAACTGAGTTGGAGAAACTGAGAAAATAAATGTTGTTTTTTTCTTTTTTTTCTTTTTTCTATTTTGCATTTTACCGGGCTAGAAGAGTTGTAATTGTTTCAAGAAAGATTTGCATTGTTTTGGAGATGTGTGTGATTGTCAAAAGCACCCTAATGTTTTGAATTCTGCAAATTGCCACTGAGACATTTAGATTATCTAGGCTTTATTTAGATGGTTTTTTTTCATTGATTTATGTATGGAGTGCGCTTTAGAGTAGTCTCCAAGTGCCATTGAACGCCTAGGTTGAGATTGTGCATGCAATGAGATTCATCGACCACTAGCTTTGTAGTTCATGCAATCCTTGGCCATTTGATTTGCAAATAATCATTTTTCCTATTGGGACAATTTGTTAGCCTTCATAGCATATTAATTAAATATTATATTTCATTAAATGTTGTTTGGGAGTTGATTAGGAATAATTAAACCTGTGTTTACCTTACAAGATTCTAAATAGATTTTATGCCATTAAAAGATGTTAAATTTGTGAACCTTTAAAGCTCATTTGTGTGTCCTTACTAGCTCTTGATTTGGTGCTATATTGTGATAATTTGTTGTGTTAAAAGCTTGAGAATTGTATGTGTAGTATTTCTATTTACATTTTTAGTAACAGATCCACCACACTATTTGTTAACGTCATCATGAATTAATGTAGTTTCAAATACATTTTCCAGTTTTTATAATCTGGCAGACTAACAATGTAGTGCTAGCGCTCTTGCTCCATTCCCATCCAATTATATGCTGTTTCATAGAATTTTGTTGTGTTTATTAAAAGAGGATTTGGCAGTCTGGCAATACTAAAACCATGCCATCCATTCATACATAATTTTTATTACAACATTAATAAAGTAGTGGTAATTTCCATGTCATAATAAAATATGAATAGCAAATCAGCCAAACAGTCTTGGATTAAAAATTTGCAAGCAACCAAACTTGTAAAACACAAAATTTTGCTGCAATTTCGTGAATAGCAATCAGCTGTTGAATGAAATATTATATGATTTCGGTCCAATTTTGGCTTCCTTGTAAATTCTAATTGATATATAAAAGTTCGCTGAGCAGTGTAATCGTGGAATACATGAACTTAAAGTTCTGCTGTGGCCTTAGTCTCTGTTTGCATTGCTGAAAAGCAACTTCGGAAATGATATGCATGCAGTTGCAGCAACCTGTAAAACGTCATGTAATGAATTAAACACCGCTAAGCTCTCTGCAACATCTTTGAACTATTTGACGATGAAAGGTACATGAAAAAAAAATGGACACAACTTAGCTTTTGCTTTTACATTCACTGCATTTCATACTCAATATGGTTGATTATCTATGAATAAAAGAGTGGAAAAAGAATTATTCAACGTCTTATCCTTATAATAAATCTTAAGAAACAAACTGCTATATTTTCAGGATTGTGCATCGCTACCCCCTTCTGTAACTTGTGCCGTGTTGTCAAAGGGCTCGGCATGAATGGCTTGCACTGCATGAAATGCTTAACTGCTTGCTGCCATGGAATGAAATTAGCGAAGCATAAATGCAGAGAAAGAGGAGGAGCTCTTCCCTTCCAACCATTTTATGCACTCTGACATGCTGTCAGGCACTTTGTTGTTGGGAAGCAATGTGTTAAAACTATGATAATTTGCTGTAGTATATATATATATATATATAT

Network for GWHGAAEX018747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.650
SRP064423	SRR2545915	Juvenile tuber	8.970
SRP108465	SRR5643513	five period of Gastrodia elata	5.270
	SRR5643514	five period of Gastrodia elata	5.770
	SRR5643515	five period of Gastrodia elata	4.040
	SRR5643524	five period of Gastrodia elata	5.650
	SRR5643525	five period of Gastrodia elata	10.100
	SRR5643528	five period of Gastrodia elata	7.090
	SRR5643658	five period of Gastrodia elata	10.230
	SRR5643659	five period of Gastrodia elata	8.880
	SRR5643660	five period of Gastrodia elata	8.550
	SRR5643661	five period of Gastrodia elata	7.800
	SRR5643662	five period of Gastrodia elata	6.610
	SRR5643663	five period of Gastrodia elata	9.920
	SRR5643664	five period of Gastrodia elata	5.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.870
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.150
SRP279888	Gastro	Gastrodia elata tuber	9.90
	Juven	Juvenile tuber	18.23
	Mother_Gastro	Mother tuber of Gastrodia elata	17.40
	Mother_Juven	Mother tuber of Juvenile	18.03